Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   KCG51_RS10675 Genome accession   NZ_CP073119
Coordinates   2259924..2261951 (-) Length   675 a.a.
NCBI ID   WP_250581008.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2254924..2266951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS10655 (KCG51_10680) tssB 2255991..2256491 (+) 501 WP_254342298.1 type VI secretion system contractile sheath small subunit -
  KCG51_RS10660 (KCG51_10685) tssC 2256676..2258064 (+) 1389 WP_254342559.1 type VI secretion system contractile sheath large subunit -
  KCG51_RS10665 (KCG51_10690) - 2258117..2258380 (-) 264 WP_049332348.1 PAAR domain-containing protein -
  KCG51_RS10670 (KCG51_10695) - 2258429..2259574 (-) 1146 WP_250581007.1 hypothetical protein -
  KCG51_RS10675 (KCG51_10700) uvrB 2259924..2261951 (-) 2028 WP_250581008.1 excinuclease ABC subunit UvrB Machinery gene
  KCG51_RS10680 (KCG51_10705) comP 2262200..2262601 (-) 402 WP_349306335.1 type IV pilin protein Machinery gene
  KCG51_RS10685 (KCG51_10710) - 2262638..2263644 (+) 1007 Protein_2063 IS5 family transposase -
  KCG51_RS10690 (KCG51_10715) comE 2264097..2264384 (-) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 675 a.a.        Molecular weight: 76920.41 Da        Isoelectric Point: 5.0030

>NTDB_id=487092 KCG51_RS10675 WP_250581008.1 2259924..2261951(-) (uvrB) [Neisseria subflava strain HP0069]
MEVIQYPNSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMAHNKTLAAQLY
AEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEY
QQMVLSVKEGDTIEQRDIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSL
HQRVGRYTVFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCKGIENYSRHFS
GKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPSARDNRPLKFHEFEKVMPQTVFVSA
TPAKYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRY
LHSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGVAILYAD
KITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEEDSGKGRLKGKNKVKVGEIHNEEDAIKEIAKL
EKAMQQAARDLQFEEAAVLRDKIRNIKENLLFGSE

Nucleotide


Download         Length: 2028 bp        

>NTDB_id=487092 KCG51_RS10675 WP_250581008.1 2259924..2261951(-) (uvrB) [Neisseria subflava strain HP0069]
ATGGAAGTCATCCAATACCCCAATTCCCCCTTCAAACTCCACCAACCCTTCCCGCCCGCCGGTGACCAGCCTACTGCCAT
TGCCGGCCTGCTCGAAGGGCTTTCAGACGGCCTTGCCTATCAAACCCTGCTCGGCGTAACCGGTTCAGGCAAAACCTACA
CCATGGCGAACGTCATCGCCCAAAGCGGTCGCCCTGCTATCATCATGGCGCACAATAAAACCCTTGCGGCCCAGCTTTAT
GCTGAAATGCGCGAGTTTTTCCCCGAAAACGCGGTGGAATATTTCGTGTCCTACTACGACTATTACCAACCCGAAGCCTA
TGTGCCCAGCCGCGATTTGTTCATCGAAAAGGATAGCGCGATCAACGAACACATCGAACAAATGCGTCTTTCCGCCACCA
AAAATCTGATGACGCGCGACGATGTGATTATCGTCGCCACTGTGTCCGCTATTTACGGTATCGGCGACCCGACCGAATAT
CAGCAAATGGTGTTGTCCGTCAAAGAAGGCGACACCATCGAGCAGCGCGACATCATCGCTACGCTCGTTTCCATGCAATA
CGAACGCGGCGATTTGGACTTCAAACGCGGCAGCTTCCGCGTGCGCGGCGACGTGATTGACGTGTACCCCGCCGAAAGCT
CCGAAAACGCCTTGCGCATCAGCCTATTCGATGACGAAATCGACCGTCTCGATATGTTCGACCCGCTTTCAGGCAGCCTG
CACCAACGCGTCGGCCGCTACACCGTCTTCCCGTCCAGCCACTACGTTACCCCGCGCGATACCGTATTGCGCGCCTGCGA
ATCCATCAAAGAAGAATTGCGCGAACGCATCGAATTTTTCGCCCGCGAACAACGCCCCGTCGAACAACAACGCATCGAAC
AGCGCACCCGCTTCGACCTCGAAATGCTCTACGAAATGGGCTTCTGCAAAGGCATCGAAAACTACTCCCGCCACTTCTCC
GGCAAAAAAGAAGGCGAACCGCCGCCCACACTGATGGACTACCTGCCCGACAACGCCATCATGTTCATCGACGAAAGCCA
CGTTACCGTTACCCAAATCGGCGGTATGTACAAAGGCGACGCATCGCGCAAGCAAAACCTCGTTGATTATGGCTTCCGCC
TGCCTTCCGCCCGCGACAACCGCCCGCTCAAATTCCACGAATTTGAAAAAGTCATGCCGCAAACCGTCTTCGTTTCCGCC
ACCCCCGCCAAATACGAAGAAGAACACGCCGGACAAGTGGTCGAACAAGTCGTCCGCCCCACAGGGCTGGTCGATCCCCA
AATCATCATCCGCCCCGTCGCCACCCAAGTCGATGACTTAATGAGCGAAATCAACGACCGCATCCAAAAAGGCGAACGCG
TACTCGTTACCACCCTCACCAAACGCATGGCGGAGCAACTCACCGACTATTACAGCGAACTCGGCATCAAAGTGCGCTAC
CTGCACAGCGACATCGACACCGTAGAGCGCGTTGAAATTATTAGAGATTTGCGGCTCGGACTGTTTGACGTACTCGTCGG
CATCAACCTCTTGCGCGAAGGTCTCGACATCCCCGAAGTCTCCCTAGTCGCCATACTCGACGCCGACAAAGAAGGCTTCC
TGCGCTCGCACCGCAGCCTGATTCAAACCATAGGCCGCGCCGCACGCAACGTGAACGGCGTTGCGATTTTGTACGCCGAC
AAAATCACCGACTCCATGAAAGCCGCTATCGACGAAACCGAACGCCGCCGCGAAAAACAGATTAAATTCAACGAAGAACA
CGGCATCGTACCGCAGCAGATTAAAAAACAAGTCAAAGACATTATCGACGGCGTGTACCACGAAGAAGACAGCGGCAAAG
GTCGTCTGAAAGGCAAAAACAAAGTTAAAGTCGGCGAAATTCACAACGAAGAAGACGCGATTAAAGAAATCGCCAAACTG
GAAAAAGCCATGCAGCAGGCAGCTAGGGATTTGCAGTTTGAAGAGGCAGCTGTGTTACGCGATAAAATTAGGAATATTAA
AGAGAACTTATTGTTTGGATCGGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(23-144)

Helicase conserved C-terminal domain (Helicase_C)

(444-549)

UvrB interaction domain (UvrB_inter)

(165-255)

UvrB/uvrC motif (UVR)

(635-668)

Ultra-violet resistance protein B (UvrB)

(557-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.354

98.222

0.544
  uvrB Streptococcus pneumoniae R6

55.354

98.222

0.544
  uvrB Streptococcus pneumoniae D39

55.354

98.222

0.544