Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IFJ75_RS11885 Genome accession   NZ_CP062222
Coordinates   2429297..2429785 (-) Length   162 a.a.
NCBI ID   WP_207868401.1    Uniprot ID   A0A975BYK2
Organism   Brevundimonas goettingensis strain LVF2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2424297..2434785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IFJ75_RS11870 (IFJ75_11850) gyrA 2424792..2427584 (-) 2793 WP_207868398.1 DNA gyrase subunit A -
  IFJ75_RS11875 (IFJ75_11855) - 2427706..2428296 (+) 591 WP_207868399.1 superoxide dismutase family protein -
  IFJ75_RS11880 (IFJ75_11860) - 2428306..2429211 (-) 906 WP_207868400.1 DMT family transporter -
  IFJ75_RS11885 (IFJ75_11865) ssb 2429297..2429785 (-) 489 WP_207868401.1 single-stranded DNA-binding protein Machinery gene
  IFJ75_RS11890 (IFJ75_11870) - 2429991..2430395 (-) 405 WP_207868402.1 hypothetical protein -
  IFJ75_RS11895 (IFJ75_11875) - 2430395..2431075 (-) 681 WP_207868403.1 hypothetical protein -
  IFJ75_RS11900 (IFJ75_11880) - 2431174..2433996 (-) 2823 WP_207868404.1 transcriptional regulator -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17628.38 Da        Isoelectric Point: 5.9603

>NTDB_id=486976 IFJ75_RS11885 WP_207868401.1 2429297..2429785(-) (ssb) [Brevundimonas goettingensis strain LVF2]
MAGSVNKVILVGNLGRDPEIRSMPNGDRIANFSLATSETWRDKSSGERKEKTEWHRVSVFNDNIVKVVENYVKKGSTVYV
EGSLQTRKWTDKDGIEKYTTEVIIGRFNGQLTMLGGRDGGGASQGGGGRGNDDDYSSGFSTGGANKPSGPRESYDLNDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=486976 IFJ75_RS11885 WP_207868401.1 2429297..2429785(-) (ssb) [Brevundimonas goettingensis strain LVF2]
ATGGCGGGCAGCGTCAACAAGGTCATTCTGGTCGGCAACCTGGGGCGCGACCCCGAAATCCGGTCGATGCCGAACGGCGA
CCGCATCGCCAACTTCTCCCTGGCCACCTCGGAAACCTGGCGCGACAAGTCCTCGGGCGAGCGCAAGGAGAAGACCGAGT
GGCACCGCGTCTCGGTCTTCAACGACAACATCGTCAAGGTCGTTGAAAACTATGTGAAAAAAGGTTCGACAGTCTATGTC
GAGGGCTCGCTGCAGACCCGCAAGTGGACCGACAAGGACGGCATCGAGAAATACACGACCGAGGTCATCATCGGCCGCTT
CAACGGCCAGCTGACCATGCTGGGCGGTCGTGACGGTGGCGGCGCCTCGCAGGGCGGCGGCGGTCGCGGCAACGACGACG
ACTATTCGTCCGGCTTCTCCACCGGCGGCGCCAACAAGCCCTCCGGCCCGCGCGAAAGCTACGACCTGAACGACGACATC
CCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.213

100

0.525
  ssb Vibrio cholerae strain A1552

47.977

100

0.512
  ssb Neisseria gonorrhoeae MS11

39.665

100

0.438
  ssb Neisseria meningitidis MC58

39.106

100

0.432