Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IHE33_RS10785 Genome accession   NZ_CP062168
Coordinates   2450013..2450540 (-) Length   175 a.a.
NCBI ID   WP_323072956.1    Uniprot ID   -
Organism   Mycetohabitans endofungorum strain B60     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2445013..2455540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHE33_RS10755 (IHE33_10620) - 2445175..2445429 (+) 255 WP_338925846.1 acyl carrier protein -
  IHE33_RS10760 (IHE33_10625) - 2445426..2447030 (+) 1605 WP_338925847.1 amino acid adenylation domain-containing protein -
  IHE33_RS10765 (IHE33_10630) - 2447014..2448159 (+) 1146 WP_338925848.1 acyl-CoA dehydrogenase family protein -
  IHE33_RS10770 (IHE33_10635) - 2448194..2448339 (-) 146 Protein_2095 IS701 family transposase -
  IHE33_RS10775 (IHE33_10640) - 2448403..2449353 (+) 951 WP_338925849.1 Rpn family recombination-promoting nuclease/putative transposase -
  IHE33_RS10780 (IHE33_10645) - 2449450..2449632 (+) 183 Protein_2097 integrase -
  IHE33_RS10785 (IHE33_10650) ssb 2450013..2450540 (-) 528 WP_323072956.1 single-stranded DNA-binding protein Machinery gene
  IHE33_RS10790 (IHE33_10655) - 2450595..2451770 (-) 1176 WP_338926978.1 MFS transporter -
  IHE33_RS10795 - 2451697..2451891 (+) 195 WP_237574374.1 hypothetical protein -
  IHE33_RS10800 (IHE33_10660) uvrA 2451937..2454813 (+) 2877 WP_338925850.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 17949.64 Da        Isoelectric Point: 5.3177

>NTDB_id=486750 IHE33_RS10785 WP_323072956.1 2450013..2450540(-) (ssb) [Mycetohabitans endofungorum strain B60]
MASVNKVILVGNLGADPETRYLPSGDAVTNIRLATTDRYKDKASGEFKELTEWHRVVFFGRLAEIAAEYLKKGSPVYVEG
RIRTRKWQDQSGQDRYSTEIVADSMQLLGGRGGSGGGGGDDFGGGASGGSSRGEGGGAGGGRASGGARQGAGGGASRPSA
PAGGGFDEMDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=486750 IHE33_RS10785 WP_323072956.1 2450013..2450540(-) (ssb) [Mycetohabitans endofungorum strain B60]
ATGGCATCCGTTAACAAAGTGATTCTTGTCGGCAATCTCGGCGCCGACCCGGAAACGCGCTACTTGCCAAGCGGCGATGC
GGTGACCAACATTCGTCTGGCCACGACGGACCGGTACAAGGACAAGGCATCGGGTGAATTTAAGGAACTGACCGAGTGGC
ACCGCGTGGTGTTCTTCGGCCGCTTGGCGGAGATCGCCGCTGAATACTTGAAGAAGGGCTCGCCGGTGTACGTTGAAGGG
CGTATCCGCACCCGCAAATGGCAGGATCAGAGCGGCCAGGACCGTTACTCGACCGAAATCGTCGCGGACAGCATGCAGTT
GTTGGGTGGCCGTGGCGGCTCAGGCGGTGGCGGGGGCGATGACTTCGGCGGCGGCGCGTCGGGCGGGTCTTCGCGAGGCG
AAGGCGGTGGTGCCGGTGGAGGGCGCGCGTCGGGTGGCGCACGCCAGGGTGCGGGCGGTGGTGCGAGCCGGCCCAGCGCG
CCTGCCGGCGGCGGATTCGATGAGATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.351

100

0.543
  ssb Glaesserella parasuis strain SC1401

49.189

100

0.52
  ssb Neisseria meningitidis MC58

41.53

100

0.434
  ssb Neisseria gonorrhoeae MS11

43.103

99.429

0.429