Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PAGR_RS20535 Genome accession   NC_017554
Coordinates   4351999..4352544 (-) Length   181 a.a.
NCBI ID   WP_013024173.1    Uniprot ID   A0A8A4K787
Organism   Pantoea ananatis PA13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4346999..4357544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAGR_RS20515 (PAGR_g3998) - 4348015..4348410 (+) 396 WP_014606933.1 transposase -
  PAGR_RS20520 (PAGR_g3999) - 4349760..4350602 (-) 843 WP_014606934.1 AraC family transcriptional regulator -
  PAGR_RS20525 (PAGR_g4000) - 4350717..4351235 (+) 519 WP_014606935.1 isochorismatase family protein -
  PAGR_RS20530 (PAGR_g4001) - 4351311..4351904 (+) 594 WP_014606936.1 DUF1349 domain-containing protein -
  PAGR_RS20535 (PAGR_g4002) ssb 4351999..4352544 (-) 546 WP_013024173.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PAGR_RS20540 (PAGR_g4003) uvrA 4352767..4355595 (+) 2829 WP_014595066.1 excinuclease ABC subunit UvrA -
  PAGR_RS20545 (PAGR_g4004) - 4355818..4356138 (-) 321 WP_014606937.1 TIGR04076 family protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19611.52 Da        Isoelectric Point: 5.2456

>NTDB_id=48672 PAGR_RS20535 WP_013024173.1 4351999..4352544(-) (ssb) [Pantoea ananatis PA13]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNAPAAGGGQGNNNGWGQPQQPQQANNNQFSGGAQSRPQQQ
PSAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=48672 PAGR_RS20535 WP_013024173.1 4351999..4352544(-) (ssb) [Pantoea ananatis PA13]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTACATGCCAAATGG
TGGCGCTGTCGCCAACATTACGCTGGCTACCTCGGAAAGCTGGCGCGATAAGCAGACCGGTGAAAACAAAGAAATCACCG
AATGGCACCGTGTTGTGCTGTTTGGCAAGCTGGCGGAAGTGGCGGGTGAATACCTGCGTAAAGGCTCTCAGGTCTATATT
GAAGGCCAGCTGCGTACCCGTAAATGGCAGGATCAGGGCGGCCAGGAACGTTACACCACCGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAAATGCTGGGTGGACGTCAGCAGGGCGGTAACGCGCCAGCAGCAGGCGGCGGCCAGGGCAACAACAACG
GTTGGGGCCAGCCTCAGCAACCGCAGCAGGCGAACAACAACCAGTTTAGCGGTGGCGCGCAGTCTCGCCCGCAGCAGCAG
CCAAGCGCACCTGCCAGCAACAACAATGAACCACCGATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.283

100

0.735
  ssb Glaesserella parasuis strain SC1401

57.812

100

0.613
  ssb Neisseria meningitidis MC58

46.154

100

0.464
  ssb Neisseria gonorrhoeae MS11

46.154

100

0.464

Multiple sequence alignment