Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JNUCC41_RS08880 Genome accession   NZ_CP062163
Coordinates   1798465..1798992 (-) Length   175 a.a.
NCBI ID   WP_034316149.1    Uniprot ID   A0A9W4KK92
Organism   Brevibacillus sp. JNUCC-41     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1793465..1803992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC41_RS08860 (JNUCC41_08860) rplI 1794537..1794986 (-) 450 WP_192207364.1 50S ribosomal protein L9 -
  JNUCC41_RS08865 (JNUCC41_08865) - 1794983..1796953 (-) 1971 WP_192207365.1 DHH family phosphoesterase -
  JNUCC41_RS08870 (JNUCC41_08870) - 1796994..1797941 (-) 948 WP_192207366.1 YybS family protein -
  JNUCC41_RS08875 (JNUCC41_08875) rpsR 1798178..1798417 (-) 240 WP_034316147.1 30S ribosomal protein S18 -
  JNUCC41_RS08880 (JNUCC41_08880) ssbA 1798465..1798992 (-) 528 WP_034316149.1 single-stranded DNA-binding protein Machinery gene
  JNUCC41_RS08885 (JNUCC41_08885) rpsF 1799062..1799346 (-) 285 WP_053348321.1 30S ribosomal protein S6 -
  JNUCC41_RS08890 (JNUCC41_08890) ychF 1799636..1800736 (-) 1101 WP_076368500.1 redox-regulated ATPase YchF -
  JNUCC41_RS08895 (JNUCC41_08895) - 1800904..1801101 (-) 198 WP_192207367.1 DUF951 domain-containing protein -
  JNUCC41_RS08900 (JNUCC41_08900) - 1801122..1801958 (-) 837 WP_192207368.1 mechanosensitive ion channel family protein -
  JNUCC41_RS08905 (JNUCC41_08905) yyaC 1802348..1802983 (+) 636 WP_192207369.1 spore protease YyaC -
  JNUCC41_RS08910 (JNUCC41_08910) - 1803039..1803740 (-) 702 WP_192207370.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19418.10 Da        Isoelectric Point: 4.8282

>NTDB_id=486663 JNUCC41_RS08880 WP_034316149.1 1798465..1798992(-) (ssbA) [Brevibacillus sp. JNUCC-41]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRSFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSSSAGERNEGGSYGGGQRSYGNNNGNDNNSYGQNPNQNQRSNNNYTRVDDDPFA
NDGKTIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=486663 JNUCC41_RS08880 WP_034316149.1 1798465..1798992(-) (ssbA) [Brevibacillus sp. JNUCC-41]
ATGATGAATCGCGTAGTTTTGGTAGGACGCTTAACTAAAGATCCTGAATTACGATATACACCTAATGGAGTTCCCGTAGC
TACCTTTACTTTAGCTGTGAACCGTAGTTTTACGAATCAGCAGGGTGAACGTGAAGCGGATTTCATTAACTGTGTAGTTT
GGCGTAAACCGGCAGAAAATGTAGCTAACTTCTTGAAAAAGGGCAGTTTAGCTGGCGTGGATGGACGTGTCCAAACACGT
AATTATGAAGGACAAGACGGCAAACGCGTATATGTGACGGAGATTCTGGCTGAGAGCGTTCAATTCCTTGAACCACGAAG
CAGTTCAGCGGGTGAAAGAAATGAAGGCGGTTCTTACGGTGGGGGTCAAAGAAGTTATGGCAATAATAACGGAAATGACA
ACAATTCGTATGGACAAAATCCTAATCAGAATCAACGGAGCAATAACAACTACACTCGTGTAGATGACGATCCGTTTGCA
AATGACGGTAAGACAATCGACATTTCAGATGACGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.101

100

0.703
  ssb Latilactobacillus sakei subsp. sakei 23K

55.618

100

0.566
  ssb Glaesserella parasuis strain SC1401

35.829

100

0.383
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

60.571

0.377