Detailed information NTG0486632

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: IGX38_RS20130
• Genome accession: NZ_CP062162
• Coordinates: 4284047..4285192 (-)
• Length: 381 a.a.
• NCBI ID: WP_019405534.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain 2020WEIHUA_G
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4279047..4290192

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IGX38_RS20105 (IGX38_20065)	-	4279124..4280140 (+)	1017	WP_011914964.1	aspartate carbamoyltransferase catalytic subunit	-
IGX38_RS20110 (IGX38_20070)	-	4280140..4281414 (+)	1275	WP_095460261.1	dihydroorotase	-
IGX38_RS20115 (IGX38_20075)	-	4281472..4281867 (-)	396	WP_011914966.1	NINE protein	-
IGX38_RS20120 (IGX38_20080)	-	4282003..4283217 (+)	1215	WP_186416207.1	putative DNA modification/repair radical SAM protein	-
IGX38_RS20125 (IGX38_20085)	-	4283217..4284050 (+)	834	WP_186416206.1	TIGR03915 family putative DNA repair protein	-
IGX38_RS20130 (IGX38_20090)	pilU	4284047..4285192 (-)	1146	WP_019405534.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
IGX38_RS20135 (IGX38_20095)	pilT	4285252..4286286 (-)	1035	WP_011914970.1	type IV pilus twitching motility protein PilT	Machinery gene
IGX38_RS20140 (IGX38_20100)	-	4286353..4287042 (+)	690	WP_045632975.1	YggS family pyridoxal phosphate-dependent enzyme	-
IGX38_RS20145 (IGX38_20105)	proC	4287053..4287877 (+)	825	WP_186416205.1	pyrroline-5-carboxylate reductase	-
IGX38_RS20150 (IGX38_20110)	-	4287887..4288477 (+)	591	WP_014598006.1	YggT family protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 42566.88 Da
• Isoelectric Point: 6.8858

>NTDB_id=486632 IGX38_RS20130 WP_019405534.1 4284047..4285192(-) (pilU) [Stutzerimonas stutzeri strain 2020WEIHUA_G]
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGKIMPVSKTPMSPEMTRETVHGVMNEQQRREFTENHECNFAISARGIGR
FRVSAFYQRNLAGMVLRRIETNIPTIEELKLPDVLKKLSMTKRGLVLFVGATGTGKSTSLASMIGYRNKNSSGHIISIED
PIEFIHQHQNCIVTQREVGIDTSSFEVALKNTLRQAPDVILIGEIRTRETMDYAVAFAETGHLCLATLHANNANQALDRI
INFFPPDRHNQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLINTPLAADLIRKGEVHELKSLMKRSTELGMQTFDQA
LYNLYVQGEITYEDALLHADSANDLRLLIKLGSETDGEHLTSVSQGLSLEVSDEDPGRRFR

Nucleotide

• Length: 1146 bp

>NTDB_id=486632 IGX38_RS20130 WP_019405534.1 4284047..4285192(-) (pilU) [Stutzerimonas stutzeri strain 2020WEIHUA_G]
ATGGAATTCGAGAAACTTCTGCGCCTGATGGTCGAAAAAGGCGGCTCCGATCTGTTCATCACGGCTGGCGTGCCGCCGTC
GATGAAGGTCAACGGCAAGATCATGCCGGTGAGCAAGACGCCCATGTCGCCGGAGATGACCCGGGAAACCGTGCACGGCG
TGATGAACGAGCAGCAGCGCCGCGAGTTCACCGAGAACCACGAATGCAACTTCGCCATCAGCGCCCGCGGCATCGGCCGC
TTCCGTGTCAGCGCGTTCTATCAGCGAAACCTGGCCGGCATGGTGCTGCGTCGCATCGAGACCAACATCCCGACCATCGA
AGAGCTCAAGCTGCCGGACGTCCTGAAGAAGCTGTCGATGACCAAACGTGGTCTGGTGCTGTTCGTCGGTGCCACCGGTA
CCGGCAAGTCGACGTCGCTGGCCTCGATGATCGGCTACCGCAACAAGAACTCCAGCGGGCACATCATCTCCATCGAAGAC
CCGATCGAATTCATCCACCAGCACCAGAATTGCATCGTCACCCAGCGCGAAGTGGGCATCGACACCAGCTCCTTCGAGGT
GGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTCATCGGCGAGATCCGTACCCGCGAAACCATGGATTACG
CGGTCGCCTTCGCCGAAACCGGCCACCTGTGCCTGGCCACGCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCGCCGGACCGGCACAACCAGGTCTGGATGGACCTGTCGCTCAACCTCAAGGCCATCGTCGCCCAGCA
GCTGGTTCCGACCCCGGACGGCAAGGGTCGTCGTGCGGTCATCGAGGTGCTGATCAATACGCCGCTGGCGGCCGACCTGA
TCCGCAAGGGCGAGGTGCACGAGCTGAAATCGCTGATGAAGCGCTCCACCGAGCTGGGTATGCAGACCTTCGACCAGGCG
CTGTACAACCTCTATGTGCAGGGCGAGATCACCTACGAAGATGCCCTGCTGCATGCTGACTCGGCCAACGACCTGCGACT
GCTGATCAAGCTGGGTTCGGAAACCGACGGTGAGCACCTGACCAGCGTATCCCAGGGCCTGAGCCTGGAGGTCAGCGACG
AGGACCCGGGCCGGCGCTTCCGTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (113-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	95.013	100	0.95
pilU	Acinetobacter baylyi ADP1	66.106	93.701	0.619
pilU	Vibrio cholerae strain A1552	59.429	91.864	0.546
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.953	88.976	0.391