Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IF654_RS03360 Genome accession   NZ_CP062158
Coordinates   642901..643425 (+) Length   174 a.a.
NCBI ID   WP_047277860.1    Uniprot ID   A0AAX2HF48
Organism   Pseudomonas lundensis strain 2T.2.5.2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 637901..648425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF654_RS03345 (IF654_07575) bfr 637910..638374 (+) 465 WP_047277866.1 bacterioferritin -
  IF654_RS03350 (IF654_07570) uvrA 638469..641303 (-) 2835 WP_047277864.1 excinuclease ABC subunit UvrA -
  IF654_RS03355 (IF654_07565) - 641500..642891 (+) 1392 WP_194862766.1 MFS transporter -
  IF654_RS03360 (IF654_07560) ssb 642901..643425 (+) 525 WP_047277860.1 single-stranded DNA-binding protein Machinery gene
  IF654_RS03365 (IF654_07555) - 643616..644506 (-) 891 WP_047277858.1 LysR family transcriptional regulator -
  IF654_RS03370 (IF654_07550) - 644674..645759 (+) 1086 WP_169895237.1 4-oxalomesaconate tautomerase -
  IF654_RS03375 (IF654_07545) - 645988..647292 (+) 1305 WP_047277853.1 CitMHS family transporter -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19531.64 Da        Isoelectric Point: 5.9455

>NTDB_id=486554 IF654_RS03360 WP_047277860.1 642901..643425(+) (ssb) [Pseudomonas lundensis strain 2T.2.5.2]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQNQGGGNNYQQSAPRQQAQRPAPQQQPQRESRPAPQQQAQQ
PAPDFDSFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=486554 IF654_RS03360 WP_047277860.1 642901..643425(+) (ssb) [Pseudomonas lundensis strain 2T.2.5.2]
ATGGCCCGTGGGGTTAACAAAGTTATATTGGTCGGCACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAAACCGGCCAGAAAGTTGAAAAGACTGAAT
GGCACCGTGTATCGATGTTCGGCAAAGTAGCCGAAATTGCTGGCGAATACCTGCGTAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGCCCACAAGGCGACCAGCAAAACCAGGGTGGCGGTAACAACTACCAGCAATCCGCGCCGC
GTCAGCAGGCTCAACGCCCGGCACCGCAGCAGCAGCCACAGCGCGAGTCGCGTCCGGCACCGCAACAGCAGGCTCAACAG
CCAGCCCCTGATTTCGACAGCTTTGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.091

100

0.598
  ssb Glaesserella parasuis strain SC1401

46.875

100

0.517
  ssb Neisseria gonorrhoeae MS11

48.619

100

0.506
  ssb Neisseria meningitidis MC58

48.066

100

0.5