Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   IF561_RS15315 Genome accession   NZ_CP062150
Coordinates   3250004..3250648 (-) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain 19-VB00998     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3245004..3255648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF561_RS15305 (IF561_15295) uvrA 3245914..3248736 (-) 2823 WP_025508045.1 excinuclease ABC subunit UvrA -
  IF561_RS15310 (IF561_15300) galU 3248874..3249746 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  IF561_RS15315 (IF561_15305) qstR 3250004..3250648 (-) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  IF561_RS15320 (IF561_15310) ssb 3250927..3251457 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  IF561_RS15325 (IF561_15315) csrD 3251698..3253707 (+) 2010 WP_264400996.1 RNase E specificity factor CsrD -
  IF561_RS15330 (IF561_15320) - 3253719..3255164 (+) 1446 WP_005481017.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=486470 IF561_RS15315 WP_005480993.1 3250004..3250648(-) (qstR) [Vibrio parahaemolyticus strain 19-VB00998]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=486470 IF561_RS15315 WP_005480993.1 3250004..3250648(-) (qstR) [Vibrio parahaemolyticus strain 19-VB00998]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTATTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCCGGGGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCGGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523