Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IG196_RS00935 Genome accession   NZ_CP062121
Coordinates   209782..210351 (+) Length   189 a.a.
NCBI ID   WP_192194569.1    Uniprot ID   A0A7L8SGL4
Organism   Variovorax sp. 38R     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 204782..215351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG196_RS00920 (IG196_00920) - 204795..205565 (+) 771 WP_180288626.1 GntR family transcriptional regulator -
  IG196_RS00925 (IG196_00925) - 205568..206464 (-) 897 WP_192194568.1 DMT family transporter -
  IG196_RS00930 (IG196_00930) uvrA 206511..209582 (-) 3072 WP_412556400.1 excinuclease ABC subunit UvrA -
  IG196_RS00935 (IG196_00935) ssb 209782..210351 (+) 570 WP_192194569.1 single-stranded DNA-binding protein Machinery gene
  IG196_RS00940 (IG196_00940) - 210722..211102 (+) 381 WP_101493373.1 helicase SNF2 -
  IG196_RS00945 (IG196_00945) - 211400..212005 (+) 606 WP_192194571.1 DUF6891 domain-containing protein -
  IG196_RS00950 (IG196_00950) - 212002..213795 (+) 1794 WP_225616880.1 VanW family protein -
  IG196_RS00955 (IG196_00955) - 213812..214417 (+) 606 WP_192194575.1 hypothetical protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 19680.59 Da        Isoelectric Point: 5.9554

>NTDB_id=486136 IG196_RS00935 WP_192194569.1 209782..210351(+) (ssb) [Variovorax sp. 38R]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGGPEDDGGYSQGGGGGGGGYSQGGGGGGGGGGYAPRAPAAAA
APRAPAPAPRQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=486136 IG196_RS00935 WP_192194569.1 209782..210351(+) (ssb) [Variovorax sp. 38R]
ATGGCATCGGTCAATAAAGTCATCGTCGTCGGCAACCTGGGGCGCGACCCCGAAATGCGGACTTTCCCGAGCGGCGATCA
GGTCGCAAACGTCACCGTGGCCACCACCGATCGCTGGAAAGACAAGCAAAGCGGTGAGATGCGCGAAGCCACCGAATGGC
ACCGCATCGTGTTCAACGGCCGCCTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
TCGCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAGTACACCACCGAAATCCGCGCCGACCAGATGCAAAT
GCTGGGCAGCCGCCAGGGCCAGGGCGGCCCGTCGGGCGGTCCGGAAGACGACGGCGGCTACTCGCAAGGCGGTGGTGGCG
GCGGCGGCGGTTATTCGCAAGGCGGCGGTGGTGGTGGCGGCGGTGGCGGTTACGCCCCGCGTGCCCCCGCAGCAGCCGCA
GCACCGCGCGCGCCGGCACCGGCGCCGCGCCAGGCTCCGGCCAAGTCGTCGTCGGGCTTCGACGACATGGACGACGACAT
TCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L8SGL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.01

100

0.534
  ssb Vibrio cholerae strain A1552

46.429

100

0.481
  ssb Neisseria gonorrhoeae MS11

43.85

98.942

0.434
  ssb Neisseria meningitidis MC58

43.316

98.942

0.429