Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JAB4_RS00230 Genome accession   NZ_CP062062
Coordinates   53163..53678 (-) Length   171 a.a.
NCBI ID   WP_034754418.1    Uniprot ID   A0A853SUJ8
Organism   Janthinobacterium sp. HH102     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 48163..58678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAB4_RS00200 (JAB4_000410) - 48762..49328 (-) 567 WP_070224799.1 GNAT family N-acetyltransferase -
  JAB4_RS00205 (JAB4_000420) - 49494..50342 (+) 849 WP_083287363.1 hypothetical protein -
  JAB4_RS00210 (JAB4_000430) - 50349..50855 (-) 507 WP_139143771.1 GNAT family N-acetyltransferase -
  JAB4_RS00215 (JAB4_000440) - 51008..51787 (-) 780 WP_070224802.1 acetoin reductase -
  JAB4_RS00220 (JAB4_000450) - 52076..52492 (+) 417 WP_070224803.1 hypothetical protein -
  JAB4_RS00225 (JAB4_000460) - 52489..52968 (-) 480 WP_070224822.1 DUF1203 domain-containing protein -
  JAB4_RS00230 (JAB4_000470) ssb 53163..53678 (-) 516 WP_034754418.1 single-stranded DNA-binding protein Machinery gene
  JAB4_RS00235 (JAB4_000480) uvrA 54060..56909 (+) 2850 WP_070224804.1 excinuclease ABC subunit UvrA -
  JAB4_RS00240 (JAB4_000490) - 56977..57543 (-) 567 WP_139143772.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18192.35 Da        Isoelectric Point: 5.9416

>NTDB_id=485971 JAB4_RS00230 WP_034754418.1 53163..53678(-) (ssb) [Janthinobacterium sp. HH102]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSYKSKDRNTGEQKELTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGVEKYATDIIAEQMQMLGGRSGMGGDAGGGDDSYGGGGGGGYDAPAPRQAPAPRPAPAPAPRPAPKPAP
NFSDMDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=485971 JAB4_RS00230 WP_034754418.1 53163..53678(-) (ssb) [Janthinobacterium sp. HH102]
ATGGCATCAGTCAACAAAGTCATCATCGTCGGCAATCTGGGCCGTGACCCGGAAATCCGCTACATGCCTAGCGGCGACGC
GATCGCCAACATCGCCGTGGCCACTTCGTACAAATCGAAGGACCGCAACACGGGCGAACAAAAAGAATTGACAGAGTGGC
ACCGTATCTCGTTCTTCGGCCGCCTGGCGGAAATCGTCGGCCAATACCTGAAAAAAGGCTCGTCCGTCTACGTCGAAGGC
CGTCTGCAAACCCGTAAATACACGGACAAGGACGGCGTCGAGAAGTATGCGACCGACATCATCGCGGAACAGATGCAAAT
GCTGGGCGGCCGTTCCGGCATGGGCGGCGACGCCGGCGGTGGCGATGACAGCTACGGTGGTGGCGGTGGCGGCGGTTACG
ACGCCCCGGCCCCGCGCCAGGCGCCAGCCCCGCGTCCAGCTCCGGCACCGGCGCCACGCCCGGCACCGAAGCCAGCACCG
AACTTCTCGGATATGGATGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853SUJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

51.111

100

0.538
  ssb Neisseria meningitidis MC58

50.556

100

0.532
  ssb Glaesserella parasuis strain SC1401

49.724

100

0.526
  ssb Vibrio cholerae strain A1552

50.279

100

0.526