Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IEJ03_RS01255 Genome accession   NZ_CP062005
Coordinates   252103..252741 (+) Length   212 a.a.
NCBI ID   WP_192035941.1    Uniprot ID   -
Organism   Halomonas sp. YLGW01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 247103..257741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEJ03_RS01245 uvrA 247645..250497 (-) 2853 WP_192035939.1 excinuclease ABC subunit UvrA -
  IEJ03_RS01250 - 250671..252047 (+) 1377 WP_192035940.1 MFS transporter -
  IEJ03_RS01255 ssb 252103..252741 (+) 639 WP_192035941.1 single-stranded DNA-binding protein Machinery gene
  IEJ03_RS01260 - 252783..253664 (+) 882 WP_192035942.1 sugar nucleotide-binding protein -
  IEJ03_RS01265 - 253661..254416 (+) 756 WP_192035943.1 lysophospholipid acyltransferase family protein -
  IEJ03_RS01270 fabB 254556..255773 (-) 1218 WP_192035944.1 beta-ketoacyl-ACP synthase I -
  IEJ03_RS01275 fabA 255787..256302 (-) 516 WP_192035945.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23178.32 Da        Isoelectric Point: 5.2239

>NTDB_id=485895 IEJ03_RS01255 WP_192035941.1 252103..252741(+) (ssb) [Halomonas sp. YLGW01]
MARGVNKVILIGNLGQDPEVRFLPSGNPVANLRIATTDSWTDRQSGQRQERTEWHTVVLFNKLAEIAQQYVKKGSRIYVE
GRLQTRKWQGQDGQDRYSTEIVCNDMQMLDSRSGGQGGYPQNDPQGAPQGGNFGGGMNQGGGMNQGGMPQGNYGNAPQQP
PQQPPQGNNFGQQGGQPQRPPQQPPQQQPQQGNNFGAPNPGSFDDFDDEIPF

Nucleotide


Download         Length: 639 bp        

>NTDB_id=485895 IEJ03_RS01255 WP_192035941.1 252103..252741(+) (ssb) [Halomonas sp. YLGW01]
ATGGCCCGTGGTGTAAACAAGGTCATCCTGATCGGCAATCTTGGCCAGGACCCGGAAGTGCGCTTCCTGCCCTCCGGCAA
CCCGGTCGCCAACCTGCGCATCGCCACCACCGACAGCTGGACCGATCGCCAGAGCGGTCAGCGTCAGGAGCGTACCGAGT
GGCACACGGTGGTGCTGTTCAACAAGCTCGCCGAGATCGCCCAGCAGTACGTCAAGAAGGGCTCGCGGATCTACGTCGAG
GGTCGCCTGCAGACCCGCAAGTGGCAGGGTCAGGATGGCCAGGACCGCTACTCCACCGAGATCGTCTGCAACGACATGCA
GATGCTCGACTCCCGCAGCGGCGGCCAGGGCGGCTATCCGCAGAACGACCCCCAGGGGGCGCCGCAGGGCGGCAACTTTG
GTGGTGGCATGAACCAGGGTGGTGGCATGAACCAGGGCGGCATGCCGCAGGGCAACTACGGCAACGCGCCCCAGCAACCG
CCGCAGCAGCCGCCCCAGGGCAACAACTTCGGTCAGCAGGGCGGTCAGCCCCAGCGCCCGCCGCAGCAGCCGCCCCAGCA
GCAACCTCAGCAGGGCAACAACTTCGGTGCCCCCAACCCGGGTAGCTTCGACGATTTCGATGATGAGATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.148

100

0.491
  ssb Glaesserella parasuis strain SC1401

46.262

100

0.467
  ssb Neisseria gonorrhoeae MS11

40.67

98.585

0.401
  ssb Neisseria meningitidis MC58

40.191

98.585

0.396