Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   I872_RS09935 Genome accession   NC_021175
Coordinates   2012803..2013393 (-) Length   196 a.a.
NCBI ID   WP_015605957.1    Uniprot ID   A0ABN4BCK6
Organism   Streptococcus cristatus AS 1.3089     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2007803..2018393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS09910 (I872_09935) cinA 2008966..2010222 (-) 1257 WP_015605952.1 competence/damage-inducible protein A Machinery gene
  I872_RS09915 (I872_09940) - 2010492..2010902 (+) 411 WP_041826926.1 helix-turn-helix domain-containing protein -
  I872_RS09920 (I872_09945) - 2010946..2011503 (-) 558 WP_015605954.1 GNAT family N-acetyltransferase -
  I872_RS09925 (I872_09950) - 2011575..2012234 (-) 660 WP_015605955.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  I872_RS09930 (I872_09955) - 2012239..2012793 (-) 555 WP_015605956.1 DNA-3-methyladenine glycosylase I -
  I872_RS09935 (I872_09960) ruvA 2012803..2013393 (-) 591 WP_015605957.1 Holliday junction branch migration protein RuvA Machinery gene
  I872_RS09940 (I872_09965) - 2013563..2014069 (+) 507 WP_015605958.1 helix-turn-helix domain-containing protein -
  I872_RS09945 (I872_09970) - 2014053..2014628 (+) 576 WP_015605959.1 RDD family protein -
  I872_RS09950 (I872_09975) hexB 2014761..2016707 (-) 1947 WP_015605960.1 DNA mismatch repair endonuclease MutL Machinery gene
  I872_RS09955 (I872_09980) brsR 2016892..2017332 (+) 441 WP_015605961.1 LytTR family DNA-binding domain-containing protein Regulator
  I872_RS09960 (I872_09985) - 2017329..2017799 (+) 471 WP_015605962.1 DUF3021 family protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21676.10 Da        Isoelectric Point: 6.1187

>NTDB_id=48581 I872_RS09935 WP_015605957.1 2012803..2013393(-) (ruvA) [Streptococcus cristatus AS 1.3089]
MYEYFKGIISKITAKYIVLEVNSIGYILHVANPYAYSGHLHQEAKVYVHQVVREDAELLYGFATEEEKQLFLNLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVAADGPTESKAPVRTVDNQELEEAMEAML
ALGYKAAELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=48581 I872_RS09935 WP_015605957.1 2012803..2013393(-) (ruvA) [Streptococcus cristatus AS 1.3089]
ATGTACGAATATTTTAAAGGAATCATCAGCAAAATTACAGCTAAATATATTGTATTGGAAGTCAACTCTATCGGATATAT
TCTTCATGTGGCCAACCCTTATGCTTACTCAGGACATCTCCATCAGGAAGCTAAGGTCTATGTTCACCAGGTGGTAAGAG
AAGATGCGGAACTCTTATATGGTTTTGCAACCGAGGAGGAGAAGCAACTTTTTCTCAACTTGATTTCAGTCTCAGGTATT
GGCCCAGTGTCTGCCCTGGCTATTATTGCGGCTGATGATAATGCTGGCTTGGTACAAGCCATTGAGCAGAAAAACATCAC
CTACCTGACCAAGTTTCCTAAGATTGGCAAGAAGACAGCCCAGCAGATGGTGCTGGACTTAGAAGGCAAGGTAGTGGCGG
CGGATGGTCCGACAGAAAGCAAGGCGCCCGTCCGGACTGTGGATAATCAGGAGCTAGAGGAAGCCATGGAAGCTATGCTG
GCTTTAGGCTACAAAGCTGCTGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACAACGGATACAGCAGAAAACTATAT
CAAGTCTGCCCTTAAGATGTTGGTGAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

84.264

100

0.847
  ruvA Streptococcus pneumoniae D39

84.264

100

0.847
  ruvA Streptococcus pneumoniae TIGR4

83.756

100

0.842
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.346

100

0.439

Multiple sequence alignment