Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ID165_RS21630 Genome accession   NZ_CP061947
Coordinates   5279049..5279510 (-) Length   153 a.a.
NCBI ID   WP_192347502.1    Uniprot ID   -
Organism   Algoriphagus sp. Y33     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5274049..5284510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID165_RS21625 gldE 5277629..5278978 (-) 1350 WP_192347501.1 gliding motility-associated protein GldE -
  ID165_RS21630 ssb 5279049..5279510 (-) 462 WP_192347502.1 single-stranded DNA-binding protein Machinery gene
  ID165_RS21635 mutY 5279556..5280626 (-) 1071 WP_192347503.1 A/G-specific adenine glycosylase -
  ID165_RS21640 - 5280772..5281080 (+) 309 WP_192347504.1 HU family DNA-binding protein -
  ID165_RS21645 - 5281099..5281926 (+) 828 WP_192347505.1 M48 family metallopeptidase -
  ID165_RS21650 - 5282105..5283676 (+) 1572 WP_192347506.1 Rne/Rng family ribonuclease -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16861.67 Da        Isoelectric Point: 4.8246

>NTDB_id=485700 ID165_RS21630 WP_192347502.1 5279049..5279510(-) (ssb) [Algoriphagus sp. Y33]
MAGVNKVILVGNLGADPEVKYLEGDNAVANVSLATTEAYKNRNGERVEQTEWHDLEMWGAQAKIAEQYLKKGSQIYVEGK
IKTDKWQDEQGQNRYRTRIRVLSFTMLGSRPDGAGGSAPSQQASQQRPTSAAPTSTPKAQEMVSDTEDDDLPF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=485700 ID165_RS21630 WP_192347502.1 5279049..5279510(-) (ssb) [Algoriphagus sp. Y33]
ATGGCAGGAGTAAATAAAGTAATCCTAGTAGGAAATCTCGGCGCAGATCCGGAAGTAAAGTATCTGGAAGGCGACAATGC
AGTAGCAAATGTAAGTTTGGCAACCACAGAAGCATACAAAAACCGAAACGGTGAAAGGGTAGAGCAAACGGAATGGCACG
ATCTGGAAATGTGGGGAGCACAGGCTAAAATAGCCGAGCAATACCTCAAAAAAGGTAGTCAGATTTACGTAGAAGGGAAA
ATCAAAACTGACAAATGGCAGGATGAGCAAGGTCAAAACCGCTATAGAACCAGAATCAGAGTACTAAGCTTTACTATGCT
TGGCAGCAGACCCGACGGGGCGGGAGGCTCTGCACCTTCCCAGCAAGCATCCCAACAAAGGCCTACATCTGCGGCGCCTA
CTTCAACGCCTAAAGCACAAGAAATGGTTTCAGATACAGAAGATGATGATCTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

43.889

100

0.516
  ssb Neisseria meningitidis MC58

41.143

100

0.471
  ssb Vibrio cholerae strain A1552

41.618

100

0.471
  ssb Neisseria gonorrhoeae MS11

40.116

100

0.451