Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   I872_RS07405 Genome accession   NC_021175
Coordinates   1503883..1504614 (+) Length   243 a.a.
NCBI ID   WP_015605513.1    Uniprot ID   A0ABN4BAP9
Organism   Streptococcus cristatus AS 1.3089     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1498883..1509614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS07375 (I872_07380) - 1499642..1500367 (+) 726 WP_015605508.1 16S rRNA pseudouridine(516) synthase -
  I872_RS12285 - 1500554..1500724 (-) 171 Protein_1438 DUF4190 domain-containing protein -
  I872_RS07380 (I872_07385) - 1500754..1501134 (-) 381 WP_015605509.1 rhodanese-like domain-containing protein -
  I872_RS07385 (I872_07390) - 1501136..1501354 (-) 219 WP_015605510.1 YqgQ family protein -
  I872_RS11040 - 1501623..1502991 (+) 1369 Protein_1441 IS3 family transposase -
  I872_RS07400 (I872_07415) - 1503201..1503716 (-) 516 WP_015605512.1 Dps family protein -
  I872_RS07405 (I872_07420) cclA/cilC 1503883..1504614 (+) 732 WP_015605513.1 prepilin peptidase Machinery gene
  I872_RS07410 (I872_07425) trpA 1504513..1505292 (-) 780 WP_015605514.1 tryptophan synthase subunit alpha -
  I872_RS07415 (I872_07430) trpB 1505285..1506508 (-) 1224 WP_015605515.1 tryptophan synthase subunit beta -
  I872_RS07420 (I872_07435) - 1506498..1507085 (-) 588 WP_015605516.1 phosphoribosylanthranilate isomerase -
  I872_RS07425 (I872_07440) trpC 1507072..1507839 (-) 768 WP_015605517.1 indole-3-glycerol phosphate synthase TrpC -
  I872_RS07430 (I872_07445) trpD 1507836..1508840 (-) 1005 WP_015605518.1 anthranilate phosphoribosyltransferase -
  I872_RS07435 (I872_07450) - 1508851..1509414 (-) 564 WP_015605519.1 aminodeoxychorismate/anthranilate synthase component II -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 27612.38 Da        Isoelectric Point: 7.6751

>NTDB_id=48550 I872_RS07405 WP_015605513.1 1503883..1504614(+) (cclA/cilC) [Streptococcus cristatus AS 1.3089]
MIHLYFFLVGTILASFLGLVIDRFPAQSIISPSSHCDNCKQMLKARDLVPILSQLLNGFCCRFCKIRLPIWYAAFELVLG
LLFLSWSLGYLPLAHLLLLTMGLTLAIYDQREQEYPLLIWLIFQFLLMATAGINPLMLFFLTLGLLAFFFDLRIGAGDFL
FLASCSAIFSLTEILILIQIASFSGLACFCFKKKKDRLAFVPCLLLVLWWLFLISCCFLDKGCYAGVLFMKSFDNLRSDN
DSI

Nucleotide


Download         Length: 732 bp        

>NTDB_id=48550 I872_RS07405 WP_015605513.1 1503883..1504614(+) (cclA/cilC) [Streptococcus cristatus AS 1.3089]
ATGATACATCTATACTTTTTTCTGGTCGGAACGATTTTAGCCTCATTTCTAGGCTTGGTCATTGACCGCTTCCCTGCACA
GTCCATCATCTCTCCAAGCAGTCACTGTGACAACTGCAAGCAGATGCTCAAAGCACGGGATTTGGTCCCTATCCTGTCTC
AGTTGCTTAATGGCTTCTGTTGCCGTTTCTGCAAGATCCGCCTTCCTATCTGGTATGCTGCTTTTGAGTTAGTGCTGGGC
TTGCTTTTTCTAAGCTGGAGTTTAGGCTATCTTCCGCTAGCCCATCTCTTACTGCTAACTATGGGCTTGACCTTGGCCAT
CTACGATCAGCGGGAGCAAGAATATCCTCTCCTAATCTGGCTGATTTTTCAGTTCTTGCTGATGGCGACAGCGGGTATCA
ATCCACTCATGCTCTTCTTTCTAACTCTGGGACTTCTAGCCTTCTTTTTTGATCTTCGTATTGGAGCTGGCGACTTTCTA
TTTCTCGCTTCCTGCTCTGCTATTTTCAGCCTAACAGAAATTCTCATTCTTATCCAAATAGCTAGCTTCTCTGGCCTCGC
CTGTTTCTGCTTTAAAAAGAAAAAAGACAGGCTAGCTTTTGTACCCTGTCTTTTGTTGGTGTTGTGGTGGTTATTTCTTA
TAAGCTGCTGCTTCTTGGATAAAGGCTGCTATGCTGGCGTCCTTTTCATGAAGAGCTTTGACAATCTTAGATCCGACAAT
GACTCCATCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis NCTC 12261

65.534

84.774

0.556

  cclA/cilC Streptococcus mitis SK321

64.563

84.774

0.547

  cclA/cilC Streptococcus pneumoniae Rx1

63.592

84.774

0.539

  cclA/cilC Streptococcus pneumoniae D39

63.592

84.774

0.539

  cclA/cilC Streptococcus pneumoniae R6

63.592

84.774

0.539

  cclA/cilC Streptococcus pneumoniae TIGR4

63.592

84.774

0.539