Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   IE382_RS15505 Genome accession   NZ_CP061870
Coordinates   2851928..2852224 (-) Length   98 a.a.
NCBI ID   WP_041334973.1    Uniprot ID   A0AAP2M473
Organism   Bacillus subtilis strain FX-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2846928..2857224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS15460 (IE382_15395) tasA 2847342..2848127 (-) 786 WP_017696201.1 biofilm matrix protein TasA -
  IE382_RS15465 (IE382_15400) sipW 2848192..2848764 (-) 573 WP_072557060.1 signal peptidase I -
  IE382_RS15470 (IE382_15405) tapA 2848748..2849503 (-) 756 WP_017696199.1 amyloid fiber anchoring/assembly protein TapA -
  IE382_RS15475 (IE382_15410) yqzG 2849774..2850100 (+) 327 WP_026113671.1 YqzG/YhdC family protein -
  IE382_RS15480 (IE382_15415) spoIIT 2850142..2850321 (-) 180 WP_014480252.1 YqzE family protein -
  IE382_RS15485 (IE382_15420) comGG 2850392..2850766 (-) 375 WP_032726157.1 ComG operon protein ComGG Machinery gene
  IE382_RS15490 (IE382_15425) comGF 2850767..2851150 (-) 384 WP_041334965.1 ComG operon protein ComGF Machinery gene
  IE382_RS15495 (IE382_15430) comGE 2851176..2851523 (-) 348 WP_041334967.1 ComG operon protein 5 Machinery gene
  IE382_RS15500 (IE382_15435) comGD 2851507..2851938 (-) 432 WP_041334970.1 comG operon protein ComGD Machinery gene
  IE382_RS15505 (IE382_15440) comGC 2851928..2852224 (-) 297 WP_041334973.1 comG operon protein ComGC Machinery gene
  IE382_RS15510 (IE382_15445) comGB 2852238..2853275 (-) 1038 WP_041334977.1 comG operon protein ComGB Machinery gene
  IE382_RS15515 (IE382_15450) comGA 2853262..2854332 (-) 1071 WP_017696192.1 competence protein ComGA Machinery gene
  IE382_RS15520 (IE382_15460) corA 2854742..2855695 (-) 954 WP_017696189.1 magnesium transporter CorA -
  IE382_RS15525 (IE382_15465) yqhB 2855837..2857165 (+) 1329 WP_017696188.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10844.72 Da        Isoelectric Point: 6.4730

>NTDB_id=485448 IE382_RS15505 WP_041334973.1 2851928..2852224(-) (comGC) [Bacillus subtilis strain FX-1]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPTLADLQSEGYVKKDAV
CPNGKHIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=485448 IE382_RS15505 WP_041334973.1 2851928..2852224(-) (comGC) [Bacillus subtilis strain FX-1]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAGGGGCAAACTCCGACCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCACATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

97.959

100

0.98
  comYC Streptococcus suis isolate S10

50.667

76.531

0.388
  comGC Staphylococcus aureus MW2

40.217

93.878

0.378
  comGC Staphylococcus aureus N315

40.217

93.878

0.378