Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   IE382_RS15500 Genome accession   NZ_CP061870
Coordinates   2851507..2851938 (-) Length   143 a.a.
NCBI ID   WP_041334970.1    Uniprot ID   -
Organism   Bacillus subtilis strain FX-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2846507..2856938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS15450 (IE382_15385) sinI 2846707..2846880 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  IE382_RS15455 (IE382_15390) sinR 2846914..2847249 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  IE382_RS15460 (IE382_15395) tasA 2847342..2848127 (-) 786 WP_017696201.1 biofilm matrix protein TasA -
  IE382_RS15465 (IE382_15400) sipW 2848192..2848764 (-) 573 WP_072557060.1 signal peptidase I -
  IE382_RS15470 (IE382_15405) tapA 2848748..2849503 (-) 756 WP_017696199.1 amyloid fiber anchoring/assembly protein TapA -
  IE382_RS15475 (IE382_15410) yqzG 2849774..2850100 (+) 327 WP_026113671.1 YqzG/YhdC family protein -
  IE382_RS15480 (IE382_15415) spoIIT 2850142..2850321 (-) 180 WP_014480252.1 YqzE family protein -
  IE382_RS15485 (IE382_15420) comGG 2850392..2850766 (-) 375 WP_032726157.1 ComG operon protein ComGG Machinery gene
  IE382_RS15490 (IE382_15425) comGF 2850767..2851150 (-) 384 WP_041334965.1 ComG operon protein ComGF Machinery gene
  IE382_RS15495 (IE382_15430) comGE 2851176..2851523 (-) 348 WP_041334967.1 ComG operon protein 5 Machinery gene
  IE382_RS15500 (IE382_15435) comGD 2851507..2851938 (-) 432 WP_041334970.1 comG operon protein ComGD Machinery gene
  IE382_RS15505 (IE382_15440) comGC 2851928..2852224 (-) 297 WP_041334973.1 comG operon protein ComGC Machinery gene
  IE382_RS15510 (IE382_15445) comGB 2852238..2853275 (-) 1038 WP_041334977.1 comG operon protein ComGB Machinery gene
  IE382_RS15515 (IE382_15450) comGA 2853262..2854332 (-) 1071 WP_017696192.1 competence protein ComGA Machinery gene
  IE382_RS15520 (IE382_15460) corA 2854742..2855695 (-) 954 WP_017696189.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16155.87 Da        Isoelectric Point: 10.1947

>NTDB_id=485447 IE382_RS15500 WP_041334970.1 2851507..2851938(-) (comGD) [Bacillus subtilis strain FX-1]
MNIKLNEEKGFTLLESLLVLSLASILLIAVFTTLPPAYDNTAVRQAARQLKNDMMLTQQTAISRQQRTKILFHKKEYQLV
MGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNVGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=485447 IE382_RS15500 WP_041334970.1 2851507..2851938(-) (comGD) [Bacillus subtilis strain FX-1]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GATTGCCGTCTTCACCACACTTCCTCCTGCTTATGACAATACAGCTGTCCGCCAGGCAGCAAGGCAGCTGAAAAATGATA
TGATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATGGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGTAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

96.503

100

0.965