Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IE339_RS23590 Genome accession   NZ_CP061868
Coordinates   4543443..4543955 (-) Length   170 a.a.
NCBI ID   WP_053401803.1    Uniprot ID   A0A0M0L4Y1
Organism   Priestia koreensis strain FS-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4538443..4548955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE339_RS23570 (IE339_23540) rplI 4539520..4539966 (-) 447 WP_242172537.1 50S ribosomal protein L9 -
  IE339_RS23575 (IE339_23545) - 4539963..4541936 (-) 1974 WP_242172539.1 DHH family phosphoesterase -
  IE339_RS23580 (IE339_23550) - 4541995..4542930 (-) 936 WP_347342731.1 YybS family protein -
  IE339_RS23585 (IE339_23555) rpsR 4543143..4543382 (-) 240 WP_053401804.1 30S ribosomal protein S18 -
  IE339_RS23590 (IE339_23560) ssbA 4543443..4543955 (-) 513 WP_053401803.1 single-stranded DNA-binding protein Machinery gene
  IE339_RS23595 (IE339_23565) rpsF 4544008..4544295 (-) 288 WP_053401802.1 30S ribosomal protein S6 -
  IE339_RS23600 (IE339_23570) ychF 4544416..4545516 (-) 1101 WP_242172543.1 redox-regulated ATPase YchF -
  IE339_RS23605 (IE339_23575) - 4545607..4547631 (-) 2025 WP_242172545.1 molybdopterin-dependent oxidoreductase -
  IE339_RS23610 (IE339_23580) - 4547711..4547908 (-) 198 WP_053401799.1 DUF951 family protein -
  IE339_RS23615 (IE339_23585) - 4547934..4548836 (-) 903 WP_242172548.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18719.54 Da        Isoelectric Point: 4.8013

>NTDB_id=485399 IE339_RS23590 WP_053401803.1 4543443..4543955(-) (ssbA) [Priestia koreensis strain FS-1]
MMNRVILVGRLTKDPELRYTPNGVAVATFTLAVNRTFTNQQGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRVQTR
NFEGQDGKRVYITEIVAESVQFLEPRTGGNEAPRNNNYAASGNQGGSGGYPFGGQDQNRNSNNQGYTRVDDDPFANDGKP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=485399 IE339_RS23590 WP_053401803.1 4543443..4543955(-) (ssbA) [Priestia koreensis strain FS-1]
ATGATGAATCGCGTAATTCTAGTTGGGCGATTAACAAAAGATCCTGAATTACGCTATACCCCAAATGGAGTAGCTGTAGC
AACTTTCACGTTAGCAGTGAATCGTACTTTTACTAACCAACAAGGTGAGCGTGAAGCAGACTTTATCAACTGTGTGGTAT
GGCGTCGCCCTGCTGAAAACGTCGCAAACTTTTTGAAAAAAGGTAGCTTGGCTGGAGTAGACGGTCGTGTACAGACTCGA
AACTTTGAAGGTCAAGACGGTAAAAGAGTCTACATCACTGAGATTGTAGCAGAGAGCGTACAATTCCTAGAACCAAGAAC
TGGTGGAAACGAAGCACCGCGTAATAATAATTACGCTGCTAGTGGAAATCAAGGTGGTTCAGGTGGATATCCATTTGGTG
GACAAGATCAGAACCGTAATTCAAACAACCAAGGTTATACACGTGTGGATGATGATCCATTTGCAAATGATGGTAAGCCA
ATCGACATCTCTGATGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M0L4Y1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.414

100

0.741
  ssb Latilactobacillus sakei subsp. sakei 23K

56.571

100

0.582
  ssb Glaesserella parasuis strain SC1401

36.413

100

0.394
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

62.353

0.365