Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J8617_RS12770 Genome accession   NZ_CP072802
Coordinates   2620351..2620887 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain PK5074     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2615351..2625887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8617_RS12750 (J8617_12745) soxR 2617079..2617543 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  J8617_RS12755 (J8617_12750) soxS 2617629..2617952 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  J8617_RS12760 (J8617_12755) pdeC 2617955..2619541 (-) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  J8617_RS12765 (J8617_12760) yjcB 2619971..2620252 (+) 282 WP_001295689.1 YjcB family protein -
  J8617_RS12770 (J8617_12765) ssb 2620351..2620887 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  J8617_RS12775 (J8617_12770) uvrA 2621141..2623963 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  J8617_RS12780 (J8617_12775) yjbR 2623998..2624354 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  J8617_RS12785 (J8617_12780) yjbQ 2624358..2624774 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  J8617_RS12790 (J8617_12785) aphA 2624885..2625598 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=485344 J8617_RS12770 WP_000168305.1 2620351..2620887(-) (ssb) [Escherichia coli strain PK5074]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=485344 J8617_RS12770 WP_000168305.1 2620351..2620887(-) (ssb) [Escherichia coli strain PK5074]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489