Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | IF132_RS16310 | Genome accession | NZ_CP061845 |
| Coordinates | 2301537..2302079 (+) | Length | 180 a.a. |
| NCBI ID | WP_039430628.1 | Uniprot ID | A0A099LPJ9 |
| Organism | Vibrio navarrensis strain 2540-90 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2302245..2319698 | 2301537..2302079 | flank | 166 |
| IScluster/Tn | 2300193..2304398 | 2301537..2302079 | within | 0 |
Gene organization within MGE regions
Location: 2300193..2319698
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF132_RS16305 (IF132_17370) | - | 2300193..2301320 (-) | 1128 | WP_039426512.1 | ISAs1 family transposase | - |
| IF132_RS16310 (IF132_17375) | ssb | 2301537..2302079 (+) | 543 | WP_039430628.1 | single-stranded DNA-binding protein | Machinery gene |
| IF132_RS16315 (IF132_17380) | - | 2302245..2303276 (+) | 1032 | WP_039431699.1 | site-specific integrase | - |
| IF132_RS16320 (IF132_17385) | - | 2303295..2304398 (-) | 1104 | WP_000583762.1 | ISAs1 family transposase | - |
| IF132_RS16325 (IF132_17390) | - | 2304554..2304763 (+) | 210 | WP_337980002.1 | hypothetical protein | - |
| IF132_RS16330 (IF132_17395) | - | 2304779..2306374 (+) | 1596 | WP_226978396.1 | tyrosine-type recombinase/integrase | - |
| IF132_RS16335 (IF132_17400) | - | 2306374..2307087 (+) | 714 | WP_226978397.1 | hypothetical protein | - |
| IF132_RS16340 (IF132_17405) | - | 2306984..2308108 (-) | 1125 | WP_039423633.1 | IS630 family transposase | - |
| IF132_RS16345 (IF132_17410) | - | 2308182..2308421 (+) | 240 | WP_020432846.1 | LexA family protein | - |
| IF132_RS16350 (IF132_17415) | - | 2308441..2310102 (+) | 1662 | WP_226978378.1 | hypothetical protein | - |
| IF132_RS16355 (IF132_17420) | - | 2310095..2310505 (+) | 411 | WP_001083107.1 | hypothetical protein | - |
| IF132_RS16360 (IF132_17425) | - | 2310521..2311045 (+) | 525 | WP_000235991.1 | hypothetical protein | - |
| IF132_RS16365 (IF132_17430) | - | 2311056..2313362 (+) | 2307 | WP_039430625.1 | AAA family ATPase | - |
| IF132_RS16370 (IF132_17435) | - | 2313530..2313802 (+) | 273 | WP_039430623.1 | 2Fe-2S iron-sulfur cluster-binding protein | - |
| IF132_RS16375 (IF132_17440) | - | 2313802..2314752 (+) | 951 | WP_039430621.1 | fatty acid desaturase family protein | - |
| IF132_RS16380 (IF132_17445) | - | 2314749..2315660 (+) | 912 | WP_039430620.1 | DMT family transporter | - |
| IF132_RS16385 (IF132_17450) | - | 2316009..2316212 (-) | 204 | WP_000852433.1 | hypothetical protein | - |
| IF132_RS16390 (IF132_17455) | - | 2316274..2317581 (-) | 1308 | WP_226978379.1 | HipA domain-containing protein | - |
| IF132_RS16395 (IF132_17460) | - | 2317828..2318951 (+) | 1124 | Protein_1975 | IS3-like element ISVpa4 family transposase | - |
| IF132_RS16400 (IF132_17465) | - | 2319011..2319385 (-) | 375 | Protein_1976 | hypothetical protein | - |
| IF132_RS16405 (IF132_17470) | - | 2319489..2319698 (+) | 210 | WP_001898369.1 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 180 a.a. Molecular weight: 19810.91 Da Isoelectric Point: 5.6659
>NTDB_id=485050 IF132_RS16310 WP_039430628.1 2301537..2302079(+) (ssb) [Vibrio navarrensis strain 2540-90]
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTDIVVQGYSGVMQMLGGRPQGGAPAMGGVPQAQQQGGWGQPQQPAAHQQQSYQAPAQQHAP
QQSQPQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTDIVVQGYSGVMQMLGGRPQGGAPAMGGVPQAQQQGGWGQPQQPAAHQQQSYQAPAQQHAP
QQSQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 543 bp
>NTDB_id=485050 IF132_RS16310 WP_039430628.1 2301537..2302079(+) (ssb) [Vibrio navarrensis strain 2540-90]
ATGGCCAGCCGTGGAATTAATAAAGTAATCTTGGTAGGGAACCTAGGGAACGACCCTGAAATTCGTTATATGCCAAGCGG
CGGTGCAGTGGCTAACATTACCGTTGCTACTTCGGAAACTTGGCGCGACAAAGCGACTGGCGAACCGCGTGAAAAAACGG
AATGGCATCGTGTTACCCTGTATGGAAAACTCGCTGAAGTCGCAGGTGAATATCTGCGTAAAGGTTCTCAGGTTTACATT
GAAGGCCAATTGCAGACGCGCAAGTGGCAAGATCAAAATGGTCAAGATCGCTACTCAACAGACATCGTGGTACAAGGTTA
CAGCGGTGTGATGCAGATGTTGGGTGGACGTCCACAAGGCGGCGCGCCAGCGATGGGTGGTGTACCTCAAGCGCAGCAAC
AGGGGGGCTGGGGACAGCCACAACAGCCAGCCGCGCATCAGCAGCAGTCATATCAAGCGCCTGCACAGCAGCATGCCCCG
CAGCAATCTCAGCCGCAGTATAATGAACCGCCAATGGATTTCGATGACGACATTCCGTTTTAG
ATGGCCAGCCGTGGAATTAATAAAGTAATCTTGGTAGGGAACCTAGGGAACGACCCTGAAATTCGTTATATGCCAAGCGG
CGGTGCAGTGGCTAACATTACCGTTGCTACTTCGGAAACTTGGCGCGACAAAGCGACTGGCGAACCGCGTGAAAAAACGG
AATGGCATCGTGTTACCCTGTATGGAAAACTCGCTGAAGTCGCAGGTGAATATCTGCGTAAAGGTTCTCAGGTTTACATT
GAAGGCCAATTGCAGACGCGCAAGTGGCAAGATCAAAATGGTCAAGATCGCTACTCAACAGACATCGTGGTACAAGGTTA
CAGCGGTGTGATGCAGATGTTGGGTGGACGTCCACAAGGCGGCGCGCCAGCGATGGGTGGTGTACCTCAAGCGCAGCAAC
AGGGGGGCTGGGGACAGCCACAACAGCCAGCCGCGCATCAGCAGCAGTCATATCAAGCGCCTGCACAGCAGCATGCCCCG
CAGCAATCTCAGCCGCAGTATAATGAACCGCCAATGGATTTCGATGACGACATTCCGTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
81.868 |
100 |
0.828 |
| ssb | Glaesserella parasuis strain SC1401 |
53.723 |
100 |
0.561 |
| ssb | Neisseria meningitidis MC58 |
49.18 |
100 |
0.5 |
| ssb | Neisseria gonorrhoeae MS11 |
49.18 |
100 |
0.5 |