Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   IF132_RS16300 Genome accession   NZ_CP061845
Coordinates   2299341..2299988 (-) Length   215 a.a.
NCBI ID   WP_039430631.1    Uniprot ID   A0A099MFY0
Organism   Vibrio navarrensis strain 2540-90     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2300193..2304398 2299341..2299988 flank 205


Gene organization within MGE regions


Location: 2299341..2304398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF132_RS16300 (IF132_17365) qstR 2299341..2299988 (-) 648 WP_039430631.1 LuxR C-terminal-related transcriptional regulator Regulator
  IF132_RS16305 (IF132_17370) - 2300193..2301320 (-) 1128 WP_039426512.1 ISAs1 family transposase -
  IF132_RS16310 (IF132_17375) ssb 2301537..2302079 (+) 543 WP_039430628.1 single-stranded DNA-binding protein Machinery gene
  IF132_RS16315 (IF132_17380) - 2302245..2303276 (+) 1032 WP_039431699.1 site-specific integrase -
  IF132_RS16320 (IF132_17385) - 2303295..2304398 (-) 1104 WP_000583762.1 ISAs1 family transposase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24667.67 Da        Isoelectric Point: 9.3465

>NTDB_id=485049 IF132_RS16300 WP_039430631.1 2299341..2299988(-) (qstR) [Vibrio navarrensis strain 2540-90]
MRKSSYARSLFFLQRANAQPPVFIDTLARAIDLPIPAITTDTLMRTDPLHRNRILLIDYQEHKVLLLQIRNLPLICKNFE
TIIFNVPKRLSTDELLGLGQSKAVFYSDCSMEKIAEGVIAVIEGQNWLPRHVQAQLLHYYRNMFNTHTAPANVDLTIREI
QVLRCLQAGASNAHIAEDLFISEYTVKSHLYQIFKKLSVKNRLQATAWADQHLLS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=485049 IF132_RS16300 WP_039430631.1 2299341..2299988(-) (qstR) [Vibrio navarrensis strain 2540-90]
ATGAGAAAATCCTCCTATGCCAGAAGCTTGTTCTTTCTCCAGCGAGCAAACGCACAACCCCCAGTATTTATTGATACCTT
AGCGCGCGCCATCGATCTCCCCATACCAGCGATTACCACAGACACCTTGATGCGAACCGATCCCTTGCACCGTAACCGTA
TCTTGTTGATCGACTATCAAGAACACAAAGTATTGCTGTTACAAATTAGAAACCTGCCACTGATTTGCAAAAACTTTGAA
ACCATCATTTTCAACGTACCAAAACGATTGAGCACCGATGAGCTGCTCGGCCTTGGACAGAGCAAAGCGGTTTTCTACTC
AGATTGCAGCATGGAAAAAATTGCCGAAGGCGTTATTGCCGTGATTGAAGGGCAAAACTGGCTACCTCGCCACGTTCAGG
CGCAGCTTCTGCATTACTACCGCAATATGTTCAACACCCATACCGCACCCGCCAATGTGGACCTGACTATTCGCGAAATT
CAAGTGCTACGCTGCTTACAAGCAGGAGCAAGCAATGCTCACATCGCCGAAGATCTGTTTATCAGCGAATACACGGTCAA
ATCGCATCTCTACCAGATTTTTAAAAAGCTCTCGGTAAAAAACCGTCTTCAGGCCACCGCCTGGGCCGATCAACATCTAC
TCTCGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A099MFY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

64.516

100

0.651
  qstR Vibrio campbellii strain DS40M4

64.352

100

0.647
  qstR Vibrio cholerae strain A1552

51.152

100

0.516