Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IF130_RS02135 Genome accession   NZ_CP061840
Coordinates   469766..470245 (-) Length   159 a.a.
NCBI ID   WP_011213016.1    Uniprot ID   A0AAV2UTR4
Organism   Legionella pneumophila subsp. pneumophila strain AW-13-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 464766..475245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF130_RS02095 (IF130_02095) rplO 464898..465332 (+) 435 WP_010946097.1 50S ribosomal protein L15 -
  IF130_RS02100 (IF130_02100) secY 465335..466663 (+) 1329 WP_011945551.1 preprotein translocase subunit SecY -
  IF130_RS02105 (IF130_02105) rpmJ 466680..466793 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  IF130_RS02110 (IF130_02110) rpsM 466871..467227 (+) 357 WP_010946100.1 30S ribosomal protein S13 -
  IF130_RS02115 (IF130_02115) rpsK 467251..467649 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  IF130_RS02120 (IF130_02120) rpsD 467666..468286 (+) 621 WP_011213013.1 30S ribosomal protein S4 -
  IF130_RS02125 (IF130_02125) - 468305..469297 (+) 993 WP_011213014.1 DNA-directed RNA polymerase subunit alpha -
  IF130_RS02130 (IF130_02130) rplQ 469316..469699 (+) 384 WP_011213015.1 50S ribosomal protein L17 -
  IF130_RS02135 (IF130_02135) ssb 469766..470245 (-) 480 WP_011213016.1 single-stranded DNA-binding protein Machinery gene
  IF130_RS02140 (IF130_02140) - 470329..471696 (-) 1368 WP_011213017.1 MFS transporter -
  IF130_RS02145 (IF130_02145) fabL 471858..472616 (+) 759 WP_011213018.1 enoyl-[acyl-carrier-protein] reductase FabL -
  IF130_RS02150 (IF130_02150) - 472687..473100 (+) 414 WP_010946108.1 acyl carrier protein -
  IF130_RS02155 (IF130_02155) - 473100..473996 (+) 897 WP_011213019.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17629.38 Da        Isoelectric Point: 4.6616

>NTDB_id=484956 IF130_RS02135 WP_011213016.1 469766..470245(-) (ssb) [Legionella pneumophila subsp. pneumophila strain AW-13-4]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGSSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=484956 IF130_RS02135 WP_011213016.1 469766..470245(-) (ssb) [Legionella pneumophila subsp. pneumophila strain AW-13-4]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGATAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTTGTCTGTTTTAATCGTCTGGGTGAAATAGCCGGTGAATACATTCGCAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTCTGATATACA
AATGCTCGATAGCAAAGGAAGTAGTGCTACCAATTACGACGACATGCCTTCATTTCAGGGATCCTCTACCCCTCAACAAG
CTTCAACAAAGAATCAAGCAACACCAACATCTACTGCACAAGATGCTTTTGATGAGTTAGATGATGACATACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.579
  ssb Vibrio cholerae strain A1552

49.714

100

0.547
  ssb Neisseria gonorrhoeae MS11

39.655

100

0.434
  ssb Neisseria meningitidis MC58

39.655

100

0.434