Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J9247_RS03695 Genome accession   NZ_CP072783
Coordinates   769782..770279 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain LICME WGH-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 764782..775279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9247_RS03680 (J9247_03680) bfr 764789..765253 (+) 465 WP_003093668.1 bacterioferritin -
  J9247_RS03685 (J9247_03685) uvrA 765326..768163 (-) 2838 WP_121358487.1 excinuclease ABC subunit UvrA Machinery gene
  J9247_RS03690 (J9247_03690) - 768377..769765 (+) 1389 WP_121358486.1 MFS transporter -
  J9247_RS03695 (J9247_03695) ssb 769782..770279 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  J9247_RS03700 (J9247_03700) pchA 770366..771796 (-) 1431 WP_119518747.1 isochorismate synthase PchA -
  J9247_RS03705 (J9247_03705) pchB 771793..772098 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  J9247_RS03710 (J9247_03710) pchC 772098..772853 (-) 756 WP_033978795.1 pyochelin biosynthesis editing thioesterase PchC -
  J9247_RS03715 (J9247_03715) pchD 772850..774493 (-) 1644 WP_003121864.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=484877 J9247_RS03695 WP_003114685.1 769782..770279(+) (ssb) [Pseudomonas aeruginosa strain LICME WGH-6]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=484877 J9247_RS03695 WP_003114685.1 769782..770279(+) (ssb) [Pseudomonas aeruginosa strain LICME WGH-6]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGCAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGTGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAACAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGATTACGACAGCTTCGAC
GACGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515