Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IEN84_RS09775 Genome accession   NZ_CP061816
Coordinates   886209..886715 (+) Length   168 a.a.
NCBI ID   WP_002967690.1    Uniprot ID   A0A7L9MC56
Organism   Brucella pinnipedialis strain 23a-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 881209..891715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEN84_RS09760 (IEN84_09760) - 881924..882199 (+) 276 WP_002964234.1 HU family DNA-binding protein -
  IEN84_RS09765 (IEN84_09765) uvrA 882386..885310 (-) 2925 WP_006160937.1 excinuclease ABC subunit UvrA -
  IEN84_RS09770 (IEN84_09770) - 885441..885641 (-) 201 WP_002964232.1 hypothetical protein -
  IEN84_RS09775 (IEN84_09775) ssb 886209..886715 (+) 507 WP_002967690.1 single-stranded DNA-binding protein Machinery gene
  IEN84_RS09780 (IEN84_09780) - 886619..886819 (-) 201 WP_002971429.1 hypothetical protein -
  IEN84_RS09785 (IEN84_09785) - 886871..887272 (-) 402 WP_002969546.1 hypothetical protein -
  IEN84_RS09790 (IEN84_09790) phnF 887416..888177 (-) 762 WP_004689719.1 phosphonate metabolism transcriptional regulator PhnF -
  IEN84_RS09795 (IEN84_09795) phnN 888364..888942 (+) 579 WP_004685664.1 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN -
  IEN84_RS09800 (IEN84_09800) - 889033..889662 (-) 630 WP_006070834.1 MarC family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18371.15 Da        Isoelectric Point: 5.3476

>NTDB_id=484821 IEN84_RS09775 WP_002967690.1 886209..886715(+) (ssb) [Brucella pinnipedialis strain 23a-1]
MAGSVNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEIVLQKFRGELQMLDSRSEGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGSSGGFSR
DLDDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=484821 IEN84_RS09775 WP_002967690.1 886209..886715(+) (ssb) [Brucella pinnipedialis strain 23a-1]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGTGCAGATCCTGAAATTCGCCGCCTGAATTCCGGCGA
TATGGTTGCCAACCTGCGCATTGCAACCTCGGAAAGCTGGCGTGACCGCCAGACCGGCGAACGCAAGGATCGCACCGAAT
GGCACAGCGTCGTCATCTTCAATGAAAATCTCGCCAAGGTTGCCGAACAATATCTGAAGAAGGGCGCCAAGGTTTATATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGATCAAAACGGCAATGACCGTTATTCAACGGAAATCGTGCTGCAAAAATT
CCGTGGAGAGCTTCAAATGCTCGACAGCCGCAGCGAAGGCGGCGAGGGCCGTTCCTTCGGCGGTGGTGGCAACCGCAACC
AGATGTCGGATTATTCCGGCGGCGGTGGAGATTTCGGCTCATCCGGCCCATCTTCGGGCAGCAGCGGCGGTTTCTCGCGC
GATCTGGACGATGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.947

100

0.554
  ssb Vibrio cholerae strain A1552

49.711

100

0.512
  ssb Neisseria meningitidis MC58

38.547

100

0.411
  ssb Neisseria gonorrhoeae MS11

37.778

100

0.405