Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   AVCA6_RS16705 Genome accession   NC_021150
Coordinates   3729251..3730309 (-) Length   352 a.a.
NCBI ID   WP_012702191.1    Uniprot ID   C1DRF8
Organism   Azotobacter vinelandii CA6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3724251..3735309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVCA6_RS16675 (AvCA6_36630) pal 3724343..3724882 (-) 540 WP_012702185.1 peptidoglycan-associated lipoprotein Pal -
  AVCA6_RS16680 (AvCA6_36640) tolB 3724942..3726234 (-) 1293 WP_012702186.1 Tol-Pal system beta propeller repeat protein TolB -
  AVCA6_RS16685 (AvCA6_36650) tolA 3726231..3727589 (-) 1359 WP_012702187.1 cell envelope integrity protein TolA -
  AVCA6_RS16690 (AvCA6_36660) tolR 3727589..3728041 (-) 453 WP_012702188.1 protein TolR -
  AVCA6_RS16695 (AvCA6_36670) tolQ 3728053..3728748 (-) 696 WP_012702189.1 protein TolQ -
  AVCA6_RS16700 (AvCA6_36680) ybgC 3728751..3729197 (-) 447 WP_012702190.1 tol-pal system-associated acyl-CoA thioesterase -
  AVCA6_RS16705 (AvCA6_36690) ruvB 3729251..3730309 (-) 1059 WP_012702191.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  AVCA6_RS16710 (AvCA6_36700) ruvA 3730310..3730915 (-) 606 WP_041807352.1 Holliday junction branch migration protein RuvA -
  AVCA6_RS16715 (AvCA6_36710) ruvC 3730932..3731456 (-) 525 WP_012702193.1 crossover junction endodeoxyribonuclease RuvC -
  AVCA6_RS16720 (AvCA6_36720) - 3731512..3732261 (-) 750 WP_012702194.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AVCA6_RS16725 (AvCA6_36730) aspS 3732342..3734117 (-) 1776 WP_012702195.1 aspartate--tRNA ligase -
  AVCA6_RS16730 (AvCA6_36740) - 3734161..3734427 (-) 267 WP_012702196.1 FmdB family zinc ribbon protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38862.53 Da        Isoelectric Point: 4.9707

>NTDB_id=48451 AVCA6_RS16705 WP_012702191.1 3729251..3730309(-) (ruvB) [Azotobacter vinelandii CA6]
MIEADRLITATGQDREEQQDRAIRPLRLAEYIGQPVVREQMELFIQAARGRREALDHTLIFGPPGLGKTTLANIIAQEMG
VSLKSTSGPVLERPGDLAALLTNLESGDVLFVDEIHRLSPVVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGMLTNPLRDRFGIVQRLEFYSVADLTTIVGRSAAILGLPTDAEGAFEIARRARGTPRIANRLLRRVRDFAQVRGEG
RITRQIADLALNLLDVDEHGLDHQDRRLLLTLIEKFDGGPVGVDSLAAAISEERHTIEDVLEPYLIQQGYMMRTPRGRVV
TRHAYLHFGLNLPARMEATMADPLADAPADGE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=48451 AVCA6_RS16705 WP_012702191.1 3729251..3730309(-) (ruvB) [Azotobacter vinelandii CA6]
GTGATCGAAGCCGATCGTCTGATCACCGCGACTGGCCAGGATCGCGAGGAGCAACAGGACCGGGCCATTCGCCCATTGCG
GCTGGCCGAGTACATCGGCCAGCCCGTCGTCCGCGAGCAGATGGAGCTGTTCATCCAGGCGGCCAGGGGGCGCCGCGAAG
CGCTCGACCACACGCTGATCTTCGGGCCGCCGGGGTTGGGCAAGACCACTCTGGCCAACATCATCGCCCAGGAGATGGGC
GTGTCGCTGAAAAGCACTTCGGGCCCGGTACTGGAGCGTCCGGGCGATCTCGCCGCACTGCTGACCAACCTGGAGTCCGG
CGATGTGCTGTTCGTCGACGAGATCCACCGTCTCTCGCCCGTGGTCGAGGAGGTGCTCTATCCGGCCATGGAGGACTTCC
AGCTCGATATCATGATCGGCGAAGGGCCGGCCGCTCGCTCGATCAAGCTCGATCTGCCGCCTTTCACCCTGGTCGGCGCC
ACCACCCGTGCCGGCATGCTGACCAATCCGTTGCGCGACCGCTTCGGCATCGTGCAGCGACTGGAGTTCTATTCGGTGGC
CGACCTGACGACCATCGTCGGCCGTTCCGCCGCCATTCTCGGCCTGCCGACCGATGCCGAGGGTGCCTTCGAGATCGCCC
GTCGTGCCCGCGGCACGCCGCGCATCGCCAATCGTCTGCTGCGTCGGGTGCGCGATTTCGCCCAGGTGCGCGGAGAGGGA
CGGATCACCCGGCAGATCGCCGATCTGGCGCTGAACCTGCTGGATGTCGACGAGCACGGCCTCGATCACCAGGACCGGCG
CCTGCTGCTGACCCTGATCGAGAAGTTCGATGGCGGTCCGGTCGGCGTGGACAGCCTGGCTGCGGCGATCAGCGAGGAGC
GTCATACCATCGAGGACGTCCTCGAGCCCTACCTCATCCAGCAGGGTTACATGATGCGTACCCCGCGCGGGCGGGTAGTC
ACGCGCCACGCCTACCTGCACTTCGGCCTGAACCTGCCTGCCCGGATGGAGGCAACGATGGCCGATCCGCTCGCCGATGC
GCCGGCTGACGGCGAATGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(258-328)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1DRF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.702

93.466

0.577
  ruvB Streptococcus pneumoniae TIGR4

60.312

90.909

0.548
  ruvB Streptococcus pneumoniae R6

60.312

90.909

0.548
  ruvB Streptococcus pneumoniae D39

60.312

90.909

0.548
  ruvB Synechocystis sp. PCC 6803

57.413

90.057

0.517
  ruvB Helicobacter pylori 26695

52.366

90.057

0.472