Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IEE84_RS11480 Genome accession   NZ_CP061739
Coordinates   2743270..2744325 (-) Length   351 a.a.
NCBI ID   WP_101204296.1    Uniprot ID   -
Organism   Psychrobacter sp. 28M-43     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2738270..2749325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEE84_RS11460 (IEE84_11460) pilQ 2738992..2741343 (-) 2352 WP_191114261.1 type IV pilus secretin PilQ -
  IEE84_RS11465 (IEE84_11465) - 2741371..2741904 (-) 534 WP_160023655.1 pilus assembly protein PilP -
  IEE84_RS11470 (IEE84_11470) - 2741904..2742623 (-) 720 WP_191114262.1 type 4a pilus biogenesis protein PilO -
  IEE84_RS11475 (IEE84_11475) - 2742620..2743270 (-) 651 WP_191114263.1 PilN domain-containing protein -
  IEE84_RS11480 (IEE84_11480) comM 2743270..2744325 (-) 1056 WP_101204296.1 type IV pilus assembly protein PilM Machinery gene
  IEE84_RS11485 (IEE84_11485) - 2744519..2747155 (+) 2637 WP_191114264.1 penicillin-binding protein 1A -
  IEE84_RS11490 (IEE84_11490) - 2747316..2747840 (-) 525 WP_191114265.1 DUF6586 family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38183.39 Da        Isoelectric Point: 4.3824

>NTDB_id=484432 IEE84_RS11480 WP_101204296.1 2743270..2744325(-) (comM) [Psychrobacter sp. 28M-43]
MRLFTSKSRHLIGVDICATSVKLVDIQRQQGMFHLKSYGIERLPEGIVVDKILVDTEAAGNIITSLARRCQVAGSNAATA
VSGSAVITKIIDMDMTLSDVEREAQIRLDADQYVPYPLEDVNLDFEVLGPSLVSEDMVQVLLAASRSENVDQRVDALAFG
GLQTKVMDIESHAIERAFGLMVDSLPNVPELVALVDIGHNQTTLYIAKNGEFIYSREQLFGGAQLTEAIQNRYGLSAEEA
TLSKRERTLPDDYYPEVLTPFIENTIQQITRSLQFYFSSSQYSSIDHVVLAGGSSSIAGLAGMAQQKLGVTVSVANPFTN
MTIAPNIDNEQLAVDAPSLMAACGLALRSFD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=484432 IEE84_RS11480 WP_101204296.1 2743270..2744325(-) (comM) [Psychrobacter sp. 28M-43]
GTGAGGCTATTTACTTCCAAAAGTCGACATTTGATTGGCGTGGATATTTGTGCCACTTCAGTAAAGTTGGTTGACATACA
GCGTCAGCAAGGCATGTTCCACCTAAAATCTTATGGTATTGAAAGACTACCGGAAGGTATCGTGGTTGATAAGATTCTAG
TAGATACAGAAGCTGCCGGTAATATTATAACGAGCTTGGCAAGACGCTGCCAAGTCGCGGGTAGCAATGCTGCGACAGCG
GTTTCTGGCTCCGCAGTGATCACTAAAATCATTGATATGGATATGACACTCAGCGATGTAGAGCGTGAGGCGCAAATACG
TTTGGATGCTGACCAGTATGTGCCTTATCCATTAGAAGACGTCAATCTAGATTTTGAAGTATTAGGACCGTCTTTGGTTA
GTGAAGATATGGTTCAGGTGTTGCTTGCTGCTTCTCGTTCAGAAAACGTCGACCAACGTGTCGATGCTTTAGCCTTTGGT
GGCTTACAAACGAAAGTCATGGATATCGAATCTCATGCAATCGAGCGTGCGTTTGGATTGATGGTAGATAGTCTACCAAA
TGTACCCGAACTAGTAGCATTGGTAGATATCGGCCATAATCAGACCACATTATATATCGCTAAGAATGGCGAGTTTATTT
ATAGTCGTGAGCAGTTATTTGGCGGTGCTCAGCTGACCGAGGCAATACAAAATCGCTATGGCCTATCAGCAGAAGAAGCG
ACACTAAGTAAACGCGAACGTACCTTACCTGATGATTACTATCCTGAAGTACTGACCCCTTTTATAGAAAATACTATTCA
ACAGATCACTCGCTCTTTACAGTTTTATTTCTCATCAAGTCAATATAGCAGTATCGATCATGTGGTGCTTGCAGGGGGCA
GCAGTTCTATTGCAGGTCTCGCTGGTATGGCACAACAAAAGCTGGGTGTAACTGTCAGTGTTGCCAACCCTTTTACCAAT
ATGACTATTGCACCAAATATTGACAATGAGCAATTGGCAGTTGATGCGCCAAGCTTAATGGCTGCATGCGGTCTTGCGTT
AAGGAGCTTTGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.712

100

0.507
  pilM Acinetobacter baumannii D1279779

50.142

100

0.501
  comM Acinetobacter baylyi ADP1

47.863

100

0.479
  pilM Legionella pneumophila strain ERS1305867

40.51

100

0.407