Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IEE84_RS10350 Genome accession   NZ_CP061739
Coordinates   2483094..2483717 (-) Length   207 a.a.
NCBI ID   WP_101204383.1    Uniprot ID   -
Organism   Psychrobacter sp. 28M-43     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2478094..2488717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEE84_RS10335 (IEE84_10335) - 2479765..2480670 (-) 906 WP_191114117.1 type II secretion system protein N -
  IEE84_RS10340 (IEE84_10340) gspN 2480671..2481498 (-) 828 WP_191114118.1 type II secretion system protein N -
  IEE84_RS10345 (IEE84_10345) - 2481728..2482051 (-) 324 WP_101204384.1 H-NS family nucleoid-associated regulatory protein -
  IEE84_RS10350 (IEE84_10350) ssb 2483094..2483717 (-) 624 WP_101204383.1 single-stranded DNA-binding protein Machinery gene
  IEE84_RS10355 (IEE84_10355) - 2484027..2484638 (-) 612 WP_191114119.1 DUF3833 domain-containing protein -
  IEE84_RS10360 (IEE84_10360) - 2484768..2486132 (-) 1365 WP_160022262.1 MFS transporter -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22480.32 Da        Isoelectric Point: 6.4792

>NTDB_id=484429 IEE84_RS10350 WP_101204383.1 2483094..2483717(-) (ssb) [Psychrobacter sp. 28M-43]
MRGVNKVIIIGNLGADPEARQFSNGGSVTNISVATSEQWTDKQSGEKREATEWHRIALFNRLGEIAAQYLRKGSKVYIEG
SLRTRKYQDQSGQDRYITEIRAEQMQMLDGQTGGGQGGDSFGGQNQGQSGGYNNQGGQNNQNNFGQQANNQMAHQGGYNQ
PAAQGGQNSFNNQAPAQQNQFNQPAQKPAQSKPTAMPDGPVDDDIPF

Nucleotide


Download         Length: 624 bp        

>NTDB_id=484429 IEE84_RS10350 WP_101204383.1 2483094..2483717(-) (ssb) [Psychrobacter sp. 28M-43]
ATGCGCGGAGTCAATAAAGTTATCATCATCGGTAACCTCGGGGCAGATCCTGAGGCACGCCAATTCAGCAATGGCGGTAG
CGTAACCAATATCTCGGTTGCGACATCAGAGCAGTGGACAGACAAACAAAGCGGCGAAAAAAGAGAAGCGACAGAGTGGC
ATCGTATCGCACTTTTCAACCGTCTAGGTGAAATCGCAGCGCAATACCTGCGCAAAGGCAGCAAAGTCTATATCGAAGGT
AGTTTGCGTACACGTAAATACCAAGACCAAAGTGGTCAAGACCGTTATATTACTGAGATTCGTGCTGAACAAATGCAGAT
GCTTGATGGTCAAACTGGCGGTGGTCAAGGTGGAGATAGCTTTGGTGGTCAAAACCAAGGTCAGAGTGGCGGCTATAATA
ATCAAGGTGGCCAAAACAATCAAAATAACTTTGGTCAGCAAGCAAATAATCAGATGGCACATCAAGGCGGCTACAACCAA
CCAGCTGCTCAAGGTGGTCAGAATAGCTTTAATAATCAAGCGCCTGCTCAGCAAAACCAGTTCAATCAGCCAGCACAGAA
ACCTGCACAATCTAAGCCTACAGCAATGCCAGACGGCCCTGTAGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.885

100

0.531
  ssb Vibrio cholerae strain A1552

46.919

100

0.478
  ssb Neisseria meningitidis MC58

40.686

98.551

0.401
  ssb Neisseria gonorrhoeae MS11

40.686

98.551

0.401