Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ID616_RS02815 Genome accession   NZ_CP061723
Coordinates   612073..612621 (+) Length   182 a.a.
NCBI ID   WP_016484656.1    Uniprot ID   -
Organism   Pseudomonas putida strain ZXPA-20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 607073..617621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID616_RS02800 (ID616_02800) bfr 607167..607631 (+) 465 WP_003255449.1 bacterioferritin -
  ID616_RS02805 (ID616_02805) uvrA 607705..610539 (-) 2835 WP_023048326.1 excinuclease ABC subunit UvrA -
  ID616_RS02810 (ID616_02810) - 610669..612063 (+) 1395 WP_016484655.1 MFS transporter -
  ID616_RS02815 (ID616_02815) ssb 612073..612621 (+) 549 WP_016484656.1 single-stranded DNA-binding protein Machinery gene
  ID616_RS02820 (ID616_02820) - 612898..614124 (-) 1227 WP_224372426.1 NTP/NDP exchange transporter -
  ID616_RS02825 (ID616_02825) - 614202..615356 (-) 1155 WP_191087211.1 MBL fold metallo-hydrolase -
  ID616_RS02830 (ID616_02830) - 615461..616102 (-) 642 WP_191087212.1 NAD(P)H-binding protein -
  ID616_RS02835 (ID616_02835) - 616241..617461 (-) 1221 WP_191087213.1 MFS transporter -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20213.33 Da        Isoelectric Point: 5.9286

>NTDB_id=484389 ID616_RS02815 WP_016484656.1 612073..612621(+) (ssb) [Pseudomonas putida strain ZXPA-20]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYNQGGQPQQYNQAPPRQQAQRPQQAPQRP
APQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=484389 ID616_RS02815 WP_016484656.1 612073..612621(+) (ssb) [Pseudomonas putida strain ZXPA-20]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAAT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTTGGCGGCCGTCCACAGGGTCAGCAGCAGGGCGGCGACCCGTACAACCAGGGTGGCGGCAACTACAACC
AGGGTGGCCAGCCCCAGCAATACAACCAGGCACCGCCTCGCCAACAGGCTCAGCGCCCGCAACAGGCCCCGCAGCGCCCG
GCGCCGCAACAGCCCGCGCCTCAGCCGGCTGCGGACTTTGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.219

100

0.588
  ssb Glaesserella parasuis strain SC1401

50

100

0.522
  ssb Neisseria meningitidis MC58

48.333

98.901

0.478
  ssb Neisseria gonorrhoeae MS11

48.333

98.901

0.478