Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ICW72_RS02960 Genome accession   NZ_CP061718
Coordinates   634464..634979 (+) Length   171 a.a.
NCBI ID   WP_191084864.1    Uniprot ID   -
Organism   Roseococcus microcysteis strain NIBR12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 629464..639979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICW72_RS02950 - 630184..631401 (+) 1218 WP_191084862.1 NAD(P)/FAD-dependent oxidoreductase -
  ICW72_RS02955 uvrA 631398..634316 (-) 2919 WP_191084863.1 excinuclease ABC subunit UvrA -
  ICW72_RS02960 ssb 634464..634979 (+) 516 WP_191084864.1 single-stranded DNA-binding protein Machinery gene
  ICW72_RS02965 gyrA 635046..637760 (+) 2715 WP_223880786.1 DNA gyrase subunit A -
  ICW72_RS02970 coaD 637753..638256 (+) 504 WP_191084865.1 pantetheine-phosphate adenylyltransferase -
  ICW72_RS02975 - 638295..638885 (+) 591 WP_191084866.1 peptidylprolyl isomerase -
  ICW72_RS02985 - 639243..639383 (-) 141 WP_191084867.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18691.67 Da        Isoelectric Point: 7.0236

>NTDB_id=484374 ICW72_RS02960 WP_191084864.1 634464..634979(+) (ssb) [Roseococcus microcysteis strain NIBR12]
MAGVNKVIILGRLGKDPEVRNFQNGGRVVNLRLATSERYKDRDGNMQERTEWHSVAIFNEKLGEIAERYLKKGSEVYIEG
QLETRKWQDQAGQERYTTEIVLRNFRGELTLVGGRGGGGGGDMGEERSYGGGDSPAPQRAGGYGGGGRTGGAQRSGWDAP
KKADLDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=484374 ICW72_RS02960 WP_191084864.1 634464..634979(+) (ssb) [Roseococcus microcysteis strain NIBR12]
ATGGCCGGCGTGAACAAGGTGATCATCCTCGGCCGGCTCGGCAAGGACCCGGAAGTGCGGAACTTCCAGAATGGCGGCCG
CGTGGTGAACCTGCGCCTCGCCACCTCCGAGCGCTACAAGGACCGTGATGGCAACATGCAGGAGCGCACAGAGTGGCACT
CCGTCGCCATCTTCAATGAGAAGTTGGGCGAAATCGCCGAGCGCTACCTGAAGAAGGGCAGCGAGGTCTACATCGAAGGC
CAGCTCGAAACCCGCAAATGGCAGGACCAGGCGGGCCAGGAGCGCTACACCACCGAGATCGTGCTGCGGAACTTCCGCGG
TGAGCTCACCCTTGTGGGCGGGCGCGGCGGCGGCGGTGGCGGCGACATGGGCGAGGAGCGTTCCTATGGCGGTGGCGACA
GCCCTGCCCCCCAGCGCGCTGGCGGCTATGGCGGCGGCGGCCGGACGGGCGGCGCGCAGCGCTCGGGCTGGGACGCGCCC
AAGAAGGCCGACCTGGACGACGACATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.149

100

0.485
  ssb Vibrio cholerae strain A1552

45

100

0.474
  ssb Neisseria meningitidis MC58

42.135

100

0.439
  ssb Neisseria gonorrhoeae MS11

40.782

100

0.427