Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IDM46_RS03410 Genome accession   NZ_CP061714
Coordinates   728091..728588 (+) Length   165 a.a.
NCBI ID   WP_185114813.1    Uniprot ID   A0A7X0QM46
Organism   Luteimonas sp. MC1825     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 723091..733588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IDM46_RS03395 (IDM46_03395) murL 724131..725489 (+) 1359 WP_185114810.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  IDM46_RS03400 (IDM46_03400) murD 725470..726909 (+) 1440 WP_185114811.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  IDM46_RS03405 (IDM46_03405) - 726906..727922 (-) 1017 WP_185114812.1 polyprenyl synthetase family protein -
  IDM46_RS03410 (IDM46_03410) ssb 728091..728588 (+) 498 WP_185114813.1 single-stranded DNA-binding protein Machinery gene
  IDM46_RS03415 (IDM46_03415) rfbB 728632..729687 (+) 1056 WP_185114814.1 dTDP-glucose 4,6-dehydratase -
  IDM46_RS03420 (IDM46_03420) rfbA 729684..730571 (+) 888 WP_182822501.1 glucose-1-phosphate thymidylyltransferase RfbA -
  IDM46_RS03425 (IDM46_03425) rfbC 730568..731125 (+) 558 WP_185114815.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  IDM46_RS03430 (IDM46_03430) rfbD 731122..732024 (+) 903 WP_185114816.1 dTDP-4-dehydrorhamnose reductase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17640.50 Da        Isoelectric Point: 5.3177

>NTDB_id=484338 IDM46_RS03410 WP_185114813.1 728091..728588(+) (ssb) [Luteimonas sp. MC1825]
MARGINKVIIVGNLGNDPDVKYTQSGSTITTISVATTEAWKDKQTGQQQERTEWHRVKFFGRLAEIAGEYLKKGRQVYIE
GSLRTDKYTGKDGVERYTTDIIASEMQMMGGVGEGGGGERGARAPRPDQGDAPRRQASAAGAGGGAGAAAPPPFNDDFSD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=484338 IDM46_RS03410 WP_185114813.1 728091..728588(+) (ssb) [Luteimonas sp. MC1825]
ATGGCCCGCGGCATCAACAAGGTCATCATCGTCGGCAACCTCGGCAACGACCCCGACGTGAAGTACACCCAGAGCGGCTC
CACCATCACCACCATCAGCGTGGCGACCACCGAGGCGTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAACGCACCGAGT
GGCACCGGGTGAAGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAATACCTCAAGAAGGGCCGCCAGGTCTACATCGAG
GGCTCGCTGCGCACCGACAAGTACACCGGCAAGGACGGCGTCGAGCGCTACACGACCGACATCATCGCCAGCGAGATGCA
GATGATGGGTGGTGTTGGCGAGGGCGGTGGCGGCGAGCGTGGCGCGCGCGCGCCGCGCCCGGACCAGGGTGACGCGCCGC
GCCGCCAGGCGTCCGCGGCAGGAGCGGGTGGTGGTGCCGGCGCCGCCGCGCCGCCGCCGTTCAACGACGATTTCTCGGAC
GACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X0QM46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.111

100

0.503
  ssb Vibrio cholerae strain A1552

44.565

100

0.497
  ssb Neisseria meningitidis MC58

44.571

100

0.473
  ssb Neisseria gonorrhoeae MS11

44.571

100

0.473