Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LYSZa7_RS06670 Genome accession   NZ_CP061699
Coordinates   1451324..1452661 (-) Length   445 a.a.
NCBI ID   WP_003110427.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain LYSZa7     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1446324..1457661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYSZa7_RS06640 (LYSZa7_06640) pilX 1446975..1447562 (-) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  LYSZa7_RS06645 (LYSZa7_06645) pilW 1447559..1448383 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  LYSZa7_RS06650 (LYSZa7_06650) pilV 1448380..1448937 (-) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  LYSZa7_RS06655 (LYSZa7_06655) - 1448928..1449434 (-) 507 WP_003110423.1 Tfp pilus assembly protein FimT/FimU -
  LYSZa7_RS06660 (LYSZa7_06660) - 1449540..1450049 (-) 510 WP_003134932.1 Tfp pilus assembly protein FimT/FimU -
  LYSZa7_RS06665 (LYSZa7_06665) thiO 1450184..1451278 (+) 1095 WP_023092933.1 glycine oxidase ThiO -
  LYSZa7_RS06670 (LYSZa7_06670) pilR 1451324..1452661 (-) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  LYSZa7_RS06675 (LYSZa7_06675) pilS 1452676..1454268 (-) 1593 WP_003110428.1 two-component system sensor histidine kinase PilS Regulator
  LYSZa7_RS06680 (LYSZa7_06680) - 1454258..1454503 (-) 246 WP_003102591.1 PP0621 family protein -
  LYSZa7_RS06685 (LYSZa7_06685) - 1454660..1455685 (-) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  LYSZa7_RS06690 (LYSZa7_06690) rluD 1455831..1456793 (+) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LYSZa7_RS06695 (LYSZa7_06695) pgeF 1456790..1457518 (+) 729 WP_015503650.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49723.03 Da        Isoelectric Point: 5.8638

>NTDB_id=484197 LYSZa7_RS06670 WP_003110427.1 1451324..1452661(-) (pilR) [Pseudomonas aeruginosa strain LYSZa7]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLADRI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=484197 LYSZa7_RS06670 WP_003110427.1 1451324..1452661(-) (pilR) [Pseudomonas aeruginosa strain LYSZa7]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGCAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAGGGCCCACGTATCGAGCGGCCGTT
CGTACCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGTGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGATCGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCAGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTATACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCCGCGAGCCTGAGCGAAATAGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.775

100

0.998
  pilR Acinetobacter baumannii strain A118

51.198

100

0.528
  luxO Vibrio cholerae strain A1552

38.17

100

0.384