Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LYSZa7_RS06650 Genome accession   NZ_CP061699
Coordinates   1448380..1448937 (-) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain LYSZa7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1443380..1453937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYSZa7_RS06635 (LYSZa7_06635) pilY1 1443472..1446963 (-) 3492 WP_023126579.1 type 4a pilus biogenesis protein PilY1 -
  LYSZa7_RS06640 (LYSZa7_06640) pilX 1446975..1447562 (-) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  LYSZa7_RS06645 (LYSZa7_06645) pilW 1447559..1448383 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  LYSZa7_RS06650 (LYSZa7_06650) pilV 1448380..1448937 (-) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  LYSZa7_RS06655 (LYSZa7_06655) - 1448928..1449434 (-) 507 WP_003110423.1 Tfp pilus assembly protein FimT/FimU -
  LYSZa7_RS06660 (LYSZa7_06660) - 1449540..1450049 (-) 510 WP_003134932.1 Tfp pilus assembly protein FimT/FimU -
  LYSZa7_RS06665 (LYSZa7_06665) thiO 1450184..1451278 (+) 1095 WP_023092933.1 glycine oxidase ThiO -
  LYSZa7_RS06670 (LYSZa7_06670) pilR 1451324..1452661 (-) 1338 WP_003110427.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=484196 LYSZa7_RS06650 WP_003094697.1 1448380..1448937(-) (pilV) [Pseudomonas aeruginosa strain LYSZa7]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=484196 LYSZa7_RS06650 WP_003094697.1 1448380..1448937(-) (pilV) [Pseudomonas aeruginosa strain LYSZa7]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978