Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IC764_RS01560 Genome accession   NZ_CP061683
Coordinates   328417..328944 (+) Length   175 a.a.
NCBI ID   WP_077168924.1    Uniprot ID   A0A7H2QWN0
Organism   Acinetobacter seifertii strain AS5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 323417..333944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC764_RS01545 (IC764_01545) pilM 325967..327025 (+) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene
  IC764_RS01550 (IC764_01550) pilN 327025..327669 (+) 645 WP_004705190.1 PilN domain-containing protein Machinery gene
  IC764_RS01555 (IC764_01555) pilO 327666..328406 (+) 741 WP_077168923.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC764_RS01560 (IC764_01560) pilP 328417..328944 (+) 528 WP_077168924.1 pilus assembly protein PilP Machinery gene
  IC764_RS01565 (IC764_01565) pilQ 329006..331132 (+) 2127 WP_151792203.1 type IV pilus secretin PilQ family protein Machinery gene
  IC764_RS01570 (IC764_01570) aroK 331144..331713 (+) 570 WP_004705195.1 shikimate kinase AroK -
  IC764_RS01575 (IC764_01575) aroB 331742..332823 (+) 1082 Protein_304 3-dehydroquinate synthase -
  IC764_RS01580 (IC764_01580) - 332839..333712 (+) 874 Protein_305 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19412.60 Da        Isoelectric Point: 8.9898

>NTDB_id=484152 IC764_RS01560 WP_077168924.1 328417..328944(+) (pilP) [Acinetobacter seifertii strain AS5]
MKIKQITLYVLVCAALVGCDSRIDAVNQQMANIRNQPPLAIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRTPQPLESYALEALSMKGSMRNSRDQILALIQTPDHQVERVQVGNYMGMNQGRITQISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=484152 IC764_RS01560 WP_077168924.1 328417..328944(+) (pilP) [Acinetobacter seifertii strain AS5]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGTTTGTGCTGCTCTTGTAGGATGTGATTCAAGAATTGATGCAGTCAA
TCAGCAAATGGCAAATATCCGTAATCAACCGCCGCTAGCTATCGAACCAGCACCTATTTTTACTCCTGTACCACAATTTA
ATTATGCTGCTCATCAATTAAAAAGTCCATTTATGCCAAGCTCACTGGCTGCTGAACTCAAAATTATGGCTGGAAAACGT
GTTTATCCAAATTTCTCACGTACGCCACAGCCATTAGAAAGTTATGCACTTGAGGCTTTAAGTATGAAAGGAAGTATGCG
GAATAGTCGTGATCAAATATTAGCTCTCATCCAGACGCCAGATCATCAAGTTGAACGCGTACAAGTGGGCAATTATATGG
GCATGAATCAGGGCCGTATTACCCAGATTAGTCCGACTCAGATTGATTTGGTCGAGATTGTGCCAGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2QWN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

93.714

100

0.937
  comL Acinetobacter baylyi ADP1

70.349

98.286

0.691