Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IC768_RS01025 Genome accession   NZ_CP061675
Coordinates   225663..226250 (+) Length   195 a.a.
NCBI ID   WP_151792171.1    Uniprot ID   A0A7H2QBJ7
Organism   Acinetobacter seifertii strain AS17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 220663..231250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC768_RS01000 (IC768_01000) - 220735..221541 (-) 807 WP_077168858.1 SDR family NAD(P)-dependent oxidoreductase -
  IC768_RS01005 (IC768_01005) - 221645..222016 (-) 372 WP_004704999.1 MerR family transcriptional regulator -
  IC768_RS01010 (IC768_01010) tenA 222081..222755 (-) 675 WP_039255497.1 thiaminase II -
  IC768_RS01015 (IC768_01015) - 223018..224100 (+) 1083 WP_004705003.1 DUF475 domain-containing protein -
  IC768_RS01020 (IC768_01020) - 224248..225612 (+) 1365 WP_004705005.1 MFS transporter -
  IC768_RS01025 (IC768_01025) ssb 225663..226250 (+) 588 WP_151792171.1 single-stranded DNA-binding protein Machinery gene
  IC768_RS01030 (IC768_01030) - 226291..226614 (-) 324 WP_151792172.1 AzlD domain-containing protein -
  IC768_RS01035 (IC768_01035) - 226611..227306 (-) 696 WP_151792173.1 AzlC family ABC transporter permease -
  IC768_RS01040 (IC768_01040) - 227375..227923 (+) 549 WP_049064731.1 helix-turn-helix domain-containing protein -
  IC768_RS01045 (IC768_01045) - 228229..229671 (+) 1443 WP_068935232.1 amino acid permease -
  IC768_RS01050 (IC768_01050) - 229737..231236 (-) 1500 WP_039252289.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21167.93 Da        Isoelectric Point: 6.4822

>NTDB_id=484029 IC768_RS01025 WP_151792171.1 225663..226250(+) (ssb) [Acinetobacter seifertii strain AS17]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGSNDFNQPRFNAPQQGGGYQNNNNQGGGYGQNNGGGYGGQG
GFGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=484029 IC768_RS01025 WP_151792171.1 225663..226250(+) (ssb) [Acinetobacter seifertii strain AS17]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCGATCGCGACAAGTGAATCTTGGACTGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTACATTGAAGGT
TCATTACGTACACGTCAATGGACAGATCAAAATGGCCAAGAGCGTTATACGACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCAGTAATGATTTTAATCAACCACGTTTTAATGCACCTCAAC
AAGGTGGCGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGTCAAAACAATGGCGGTGGTTATGGTGGCCAAGGT
GGTTTCGGTAATGGTGGAAACAGCCCGCAAGGTGGTGGATTTGCTCCTAAAGCGCCGCAACAACCAGCGTCTGCACCAGC
TGATTTAGACGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2QBJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.208

100

0.544
  ssb Vibrio cholerae strain A1552

44.335

100

0.462
  ssb Neisseria gonorrhoeae MS11

38.119

100

0.395
  ssb Neisseria meningitidis MC58

37.931

100

0.395