Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   IC772_RS17930 Genome accession   NZ_CP061664
Coordinates   3867041..3868171 (+) Length   376 a.a.
NCBI ID   WP_191016022.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS28     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3862041..3873171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC772_RS17905 (IC772_17895) - 3862302..3862508 (-) 207 WP_039252952.1 hypothetical protein -
  IC772_RS17910 (IC772_17900) - 3862561..3864675 (-) 2115 WP_191016019.1 TonB-dependent copper receptor -
  IC772_RS17915 (IC772_17905) - 3864749..3865177 (-) 429 WP_191016021.1 DUF2946 family protein -
  IC772_RS17920 (IC772_17910) def 3865213..3865743 (-) 531 WP_004705924.1 peptide deformylase -
  IC772_RS17925 (IC772_17915) tsaP 3865866..3867020 (+) 1155 WP_004705925.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  IC772_RS17930 (IC772_17920) dprA 3867041..3868171 (+) 1131 WP_191016022.1 DNA-processing protein DprA Machinery gene
  IC772_RS17935 (IC772_17925) - 3868222..3868791 (+) 570 WP_019458003.1 L-threonylcarbamoyladenylate synthase -
  IC772_RS17940 (IC772_17930) - 3869182..3870102 (-) 921 WP_191016024.1 DMT family transporter -
  IC772_RS17945 (IC772_17935) - 3870209..3870862 (-) 654 WP_191016026.1 TetR/AcrR family transcriptional regulator -
  IC772_RS17950 (IC772_17940) - 3870998..3872212 (+) 1215 WP_039252932.1 MFS transporter -
  IC772_RS17955 (IC772_17945) - 3872233..3872997 (+) 765 WP_191016027.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41834.45 Da        Isoelectric Point: 6.4978

>NTDB_id=483949 IC772_RS17930 WP_191016022.1 3867041..3868171(+) (dprA) [Acinetobacter seifertii strain AS28]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGDCEKATQPDGLAKWQSLGLHANHLKRLNDFQTAQGQTEFERLIQQV
QQHTDFILTPDDAGYPTQLLPYTDHPPVIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASVHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIISEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKIVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQNSTEEAIVSCTPEIP
EHLINLYQSLDWVGQNIDQLILHHSQPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=483949 IC772_RS17930 WP_191016022.1 3867041..3868171(+) (dprA) [Acinetobacter seifertii strain AS28]
ATGCTTACCCAACTTTCTTCACACCATTACCACACACTTAAAGTGTGGTATTTGGTGCAACACTCATTAGTTAGCTTCAA
AAAAATTATTGATTATTTTGGAGACTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGCAATCTCTTGGCTTAC
ATGCTAATCACTTAAAGCGTCTAAACGATTTCCAAACGGCGCAAGGTCAAACTGAGTTTGAACGACTTATACAACAAGTT
CAGCAGCATACTGATTTTATTTTAACGCCAGATGATGCTGGCTATCCAACTCAATTACTCCCTTATACAGATCATCCACC
TGTTATTTTTGGAAAAGGTCAGGCACAAGCATTATTACAACCGCAAATTGCGATTGTCGGTAGCCGAAAACCTAGCCCAC
ATGGTCGTCAGGTGGCTTATGATTTTGCCTATTATTTAAGTGAAAAAGGTTTTTATGTAAGTAGCGGCTTGGCATACGGC
ATTGATGAAGCAGCTCATCAAGGTGCATCTGTTCATCAACGTACGATAGCAGTGACAGGGACCGGTTTAGACAGTACCTA
TCCAGCTCAAAATAAAAAATTGGCAGAACATATTCTGGCTCAGAACGGCGCCATCATTAGTGAGTTTTTACCGGGAACAC
CACCACTACAGCAGCATTTTCCGCGTAGAAACCGAATTGTTAGCGGTCTGAGTTTAGGCGTATTAGTTGTAGAAGCGACT
TTAAAAAGTGGCTCCCTCATTACTGCCAATAAAGCAGCTGAGCAAGGCAAAATCGTATTTGCCATTCCCGGTCATATTTA
CAGTGAATTTCATCAAGGTTGCCATCAACTTATTCGTGAAGGTGCAATTTTAGTCGATCACCCTGAACAAATTATTGAAG
ACCTCGCCCTACCCACCCAATGGCAGAGCCAACAAAACTCAACAGAGGAGGCAATCGTTTCTTGCACCCCAGAAATTCCA
GAGCATTTGATTAATCTTTATCAGTCTTTAGACTGGGTAGGCCAAAATATTGACCAGCTTATTTTGCATCATTCACAACC
TGTTTCTGAACTCACCTCATCATTGATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGATTGTATTTACGTT
GTCGTTCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

90.691

100

0.907

  dprA Acinetobacter baumannii D1279779

90.691

100

0.907

  dprA Acinetobacter baylyi ADP1

71.654

100

0.726