Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IC772_RS01010 Genome accession   NZ_CP061664
Coordinates   223680..224267 (+) Length   195 a.a.
NCBI ID   WP_049065869.1    Uniprot ID   A0A2T5R1E9
Organism   Acinetobacter seifertii strain AS28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 218680..229267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC772_RS00985 (IC772_00985) - 218754..219560 (-) 807 WP_191016280.1 SDR family NAD(P)-dependent oxidoreductase -
  IC772_RS00990 (IC772_00990) - 219664..220034 (-) 371 Protein_191 MerR family transcriptional regulator -
  IC772_RS00995 (IC772_00995) tenA 220099..220773 (-) 675 WP_039255497.1 thiaminase II -
  IC772_RS01000 (IC772_01000) - 221036..222118 (+) 1083 WP_004705003.1 DUF475 domain-containing protein -
  IC772_RS01005 (IC772_01005) - 222265..223629 (+) 1365 WP_004705005.1 MFS transporter -
  IC772_RS01010 (IC772_01010) ssb 223680..224267 (+) 588 WP_049065869.1 single-stranded DNA-binding protein Machinery gene
  IC772_RS19220 - 224475..224609 (+) 135 WP_267456993.1 hypothetical protein -
  IC772_RS01015 (IC772_01015) - 224757..225449 (+) 693 WP_191016282.1 hypothetical protein -
  IC772_RS01020 (IC772_01020) - 225565..227829 (+) 2265 WP_191016284.1 P-loop NTPase fold protein -
  IC772_RS01025 (IC772_01025) - 228046..228369 (-) 324 WP_151762610.1 AzlD domain-containing protein -
  IC772_RS01030 (IC772_01030) - 228366..229061 (-) 696 WP_191016286.1 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21194.95 Da        Isoelectric Point: 6.4822

>NTDB_id=483913 IC772_RS01010 WP_049065869.1 223680..224267(+) (ssb) [Acinetobacter seifertii strain AS28]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNNQGGGYGQNNGGGYGNQG
GFGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=483913 IC772_RS01010 WP_049065869.1 223680..224267(+) (ssb) [Acinetobacter seifertii strain AS28]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCGATCGCGACAAGTGAATCTTGGACTGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTACATTGAAGGT
TCATTACGTACACGTCAGTGGACAGATCAAAATGGCCAAGAGCGTTATACGACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGCGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGTCAAAACAATGGTGGTGGTTATGGTAATCAAGGT
GGTTTTGGTAATGGTGGCAACAGCCCGCAAGGTGGTGGATTTGCTCCTAAAGCGCCGCAACAACCAGCATCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T5R1E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.691

100

0.549
  ssb Vibrio cholerae strain A1552

45

100

0.462
  ssb Neisseria meningitidis MC58

36.869

100

0.374
  ssb Neisseria gonorrhoeae MS11

36.869

100

0.374