Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   IC776_RS16550 Genome accession   NZ_CP061646
Coordinates   3562933..3567117 (-) Length   1394 a.a.
NCBI ID   WP_191012231.1    Uniprot ID   A0A7H2NMA9
Organism   Acinetobacter seifertii strain AS39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3557933..3572117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC776_RS16515 (IC776_16515) - 3558666..3559607 (+) 942 WP_081409789.1 lipase family alpha/beta hydrolase -
  IC776_RS16520 (IC776_16520) rplS 3559661..3560029 (-) 369 WP_002116654.1 50S ribosomal protein L19 -
  IC776_RS16525 (IC776_16525) trmD 3560249..3561004 (-) 756 WP_151682763.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  IC776_RS16530 (IC776_16530) rimM 3561050..3561598 (-) 549 WP_004705239.1 ribosome maturation factor RimM -
  IC776_RS16535 (IC776_16535) rpsP 3561618..3561869 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  IC776_RS16540 (IC776_16540) pilE 3562016..3562441 (-) 426 WP_174743602.1 type IV pilin protein Machinery gene
  IC776_RS16545 (IC776_16545) pilY2 3562438..3562920 (-) 483 WP_191012230.1 type IV pilin protein Machinery gene
  IC776_RS16550 (IC776_16550) pilY1 3562933..3567117 (-) 4185 WP_191012231.1 PilC/PilY family type IV pilus protein Machinery gene
  IC776_RS16555 (IC776_16555) pilX 3567117..3567932 (-) 816 WP_191012232.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IC776_RS16560 (IC776_16560) pilW 3567929..3568927 (-) 999 WP_191012233.1 PilW family protein Machinery gene
  IC776_RS16565 (IC776_16565) pilV 3568927..3569487 (-) 561 WP_134262473.1 type IV pilus modification protein PilV Machinery gene
  IC776_RS16570 (IC776_16570) fimU 3569481..3569954 (-) 474 WP_134262475.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IC776_RS16575 (IC776_16575) ispH 3570122..3571072 (-) 951 WP_004705229.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IC776_RS16580 (IC776_16580) gmk 3571195..3571824 (+) 630 WP_039250522.1 guanylate kinase -

Sequence

Protein


Download         Length: 1394 a.a.        Molecular weight: 149312.39 Da        Isoelectric Point: 7.2175

>NTDB_id=483825 IC776_RS16550 WP_191012231.1 3562933..3567117(-) (pilY1) [Acinetobacter seifertii strain AS39]
MGNIMKLHFKPNKLWYAIYSTSMTFTCLMTSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMGRTIQSGYSIYDDYGITS
CSTTYVNSTTTPSYRRYYCGISSNTTNSKVTNLSTGCEKQADNSYRCYDRLTRLKDGMFSFLENNNPIFNNVSVGLGHFS
TYSSGTTGDNNSGEILVPAANLGIVGSAQRVALKNAVAGLEASGGTPTANAFAEAAAYLMGTRTLSSTTANVAMYFKYYP
VLTQTSQTVYYACGNTSASGSTDNTKCTYTPTTIPSQSNLSNYSSNTTSSTNGNITTYTTYYYKTTGWFYPTTTYYYKTT
YSETKVTSSTPNYQSCTAYNSNGCTTWSAASLTNPTTDTYDTQCTINTVSGTCVYQTKTILGTNSYSGFNSSVQSSKDPD
TNYTTYKSPLPPVTQRQSCDGQGVYILSDGEPTNNVNSSVLASALNLSSFSNSGGLSGGTNWDYMSNFAKALFNGGVIQS
DANNATNPANVSIQTAFVGFGSALNALSTTDAKNACKMSSRTQIDRSGDDACSPNQGTNAVSAPGYGNGGFFPTQSAQGV
TDSVIAFINNLGKVPLEPLTTGAISVPYDALNPKNLQEYGYLRAFEPDPANSYLTWRGNLKKYHVILSGSNAGAFEANSG
GLVYDANGAFRSGTKDYWNSSSYNDGGKVFLGGAYSNVPLPTLGQAEEVNSQGNITKYYYAAKNKIRNLFTDVSTVAADG
SLTKISTTNINLLKIPAAPAVNTNPFDTPANTASYVLGKFNSSTGQDVLKAFPVSLKLKLLNYLGYPTDITATALPSTLT
TSNAPYLSMGGSIHSFPVQLTYSGTLDQNGNLTSAREQSILYGSMEGGLHIVDASTGVEQMVFIPADILNDTVASKALVV
GQSDSTAPAQGMDGAWVSDPAYNITTTGSGSSVVSKVTAKQMNIYGGMRMGGSSYYGLNVLNPSSPQLMFRIGADQSDYS
RMGQSWSKPVLANIRYNGAIRRVMIVGGGYDQCYEKPNITLSDSCFSNGKAKGNAVYIIDAKTGERLWWASDTGSNNDNA
NMKHSIVSRISTLDRDGDGLVDHLYFGDLGGQVFRVDLNNNQTQTNSTYSSFGIRVVRLANLATNDTTNDSGNDYTAGNA
PRFYEPPTVTIHDYGVRSFITVGIASGDRSTPLDVYPIIGREGMSPSTALSGRPVNNVYGIIDRDFIKKNLMSLSDSQLE
TKDLIRSNLRKNPQILRAGETSVGQVFFPSTGTGQAGWYRSLSSTSNGTEKADNSFRIKGGMKAFEEPIAITGNLIVPVY
DPQGTGIVASDPCLPRVVGETDRQTYCLPFGVCLNTDGSINHNKEDNSGFGTDGSKNLNVIGSGVRNITFVPSEDNPSPQ
NSCGKLKLSGNEQGTGQWQCTSYLIPARWYERYR

Nucleotide


Download         Length: 4185 bp        

>NTDB_id=483825 IC776_RS16550 WP_191012231.1 3562933..3567117(-) (pilY1) [Acinetobacter seifertii strain AS39]
ATGGGGAATATCATGAAACTACATTTCAAACCAAATAAATTATGGTATGCCATCTATTCAACTTCGATGACATTTACATG
TCTTATGACAAGTTCTGTAGTGCAGGCAAGTGATTTACAAATCTATGCTTCACCTACAGCAGGTAAAAAAACGATTGTCA
TGATGCTAGATACTTCTGGATCAATGGGACGTACGATCCAGTCTGGTTATAGTATTTATGATGATTATGGTATTACAAGT
TGTTCAACTACTTATGTAAACTCAACAACTACTCCCAGTTATCGTCGATATTATTGCGGGATTTCCTCAAATACCACTAA
TAGCAAAGTAACTAATTTATCAACCGGATGTGAGAAACAGGCAGATAATAGTTATCGTTGCTATGACCGGTTAACGCGTC
TGAAAGATGGTATGTTTTCTTTTTTAGAAAATAATAACCCTATATTTAATAATGTAAGTGTTGGATTGGGACATTTCTCT
ACATATAGCAGTGGCACTACTGGAGATAATAATAGTGGTGAAATTTTAGTTCCAGCAGCAAATTTGGGTATTGTCGGATC
TGCTCAACGAGTTGCATTAAAAAATGCTGTAGCTGGATTAGAAGCAAGTGGTGGTACCCCTACAGCGAATGCTTTTGCTG
AGGCTGCAGCTTACTTAATGGGAACACGAACATTAAGCTCGACTACAGCAAACGTGGCAATGTATTTTAAATATTATCCA
GTTTTAACTCAGACGTCACAAACCGTTTATTATGCCTGTGGTAATACTTCAGCTAGTGGTTCAACAGATAATACAAAGTG
TACATATACGCCGACCACAATTCCAAGCCAGTCTAATTTATCTAACTATAGTAGTAATACTACAAGCTCAACAAATGGAA
ATATAACGACTTACACCACTTATTATTATAAAACGACTGGATGGTTTTATCCCACAACGACCTATTACTATAAAACTACT
TATAGTGAAACTAAAGTAACCAGTTCAACACCTAATTATCAAAGCTGTACAGCATATAACTCTAATGGCTGTACTACTTG
GAGTGCCGCTTCTTTAACTAATCCAACAACAGATACCTATGATACGCAATGTACAATTAATACAGTGTCTGGTACATGTG
TCTATCAAACTAAAACAATTTTAGGTACAAACAGTTATAGTGGGTTTAATAGTTCTGTTCAAAGTTCAAAAGATCCAGAT
ACCAACTACACTACATATAAATCACCATTACCTCCCGTTACTCAGCGTCAAAGTTGTGATGGACAAGGGGTTTATATTTT
GTCTGATGGTGAACCAACGAATAACGTAAACTCTTCTGTTTTAGCCTCTGCCTTGAACCTTAGTTCGTTTAGTAATAGTG
GTGGACTGAGCGGTGGTACAAACTGGGATTATATGAGTAACTTCGCTAAAGCCTTGTTTAATGGCGGGGTAATTCAAAGT
GATGCTAATAATGCTACAAACCCAGCTAATGTATCTATACAAACTGCTTTTGTTGGTTTTGGTTCAGCTTTAAATGCCTT
AAGCACTACAGATGCGAAAAACGCTTGTAAAATGAGTTCTCGTACTCAAATAGATAGAAGCGGAGATGATGCATGCTCTC
CGAATCAGGGGACAAATGCTGTATCTGCCCCAGGTTATGGTAATGGTGGATTTTTTCCTACTCAAAGTGCGCAGGGAGTA
ACCGATAGCGTAATTGCATTTATTAATAACTTAGGGAAAGTACCTTTAGAGCCTCTTACTACTGGAGCGATTTCTGTACC
TTATGATGCATTGAATCCTAAAAACCTACAGGAATATGGTTATTTACGAGCTTTTGAGCCAGATCCGGCAAATTCTTATT
TGACTTGGCGAGGTAACTTAAAAAAATATCATGTGATTTTATCTGGTTCAAATGCTGGTGCATTTGAAGCGAACTCTGGT
GGGCTGGTCTATGATGCAAATGGAGCATTCCGTAGTGGTACAAAAGATTATTGGAATAGCTCTAGTTATAATGATGGCGG
AAAAGTTTTCTTAGGAGGAGCCTATAGCAATGTACCATTACCAACTTTAGGTCAGGCAGAAGAGGTAAATTCTCAAGGTA
ATATTACTAAATATTATTATGCAGCAAAAAATAAAATCCGAAATCTATTTACTGATGTTTCTACCGTGGCTGCAGATGGT
AGTTTAACTAAAATATCAACTACAAATATTAATTTACTGAAAATTCCTGCTGCGCCTGCTGTAAATACAAATCCTTTTGA
TACACCAGCAAATACTGCAAGTTATGTGCTAGGAAAATTTAATAGCTCTACGGGACAAGATGTGTTGAAGGCATTTCCTG
TGAGCTTAAAATTAAAATTATTAAATTACTTGGGTTATCCGACAGATATTACGGCGACAGCTCTACCAAGCACATTAACC
ACATCAAATGCCCCTTATTTATCGATGGGCGGGAGTATCCACTCTTTTCCGGTACAGCTGACTTATAGTGGTACTTTAGA
TCAAAACGGAAATTTAACCAGTGCACGTGAGCAATCTATTCTTTACGGAAGTATGGAAGGCGGATTGCATATCGTAGATG
CCTCTACTGGGGTTGAGCAAATGGTATTTATCCCAGCCGATATATTAAATGATACGGTGGCGTCTAAAGCTTTAGTGGTA
GGGCAAAGTGATTCAACAGCCCCTGCTCAAGGTATGGATGGAGCATGGGTATCGGACCCAGCATATAACATTACCACTAC
AGGTTCAGGTAGTTCAGTAGTATCAAAAGTTACTGCTAAACAAATGAATATTTATGGTGGAATGCGTATGGGTGGCAGTA
GCTATTATGGATTAAATGTATTAAATCCAAGTTCCCCACAATTAATGTTTAGAATAGGTGCAGATCAATCTGACTATAGC
CGTATGGGGCAAAGCTGGTCTAAGCCCGTACTTGCAAATATTCGTTATAACGGTGCGATTAGACGTGTCATGATTGTTGG
CGGTGGTTATGATCAATGCTACGAGAAACCAAATATCACGTTGAGTGACTCATGCTTTAGTAATGGTAAGGCAAAAGGAA
ATGCTGTCTATATTATCGATGCTAAAACCGGAGAGCGTTTATGGTGGGCCAGTGATACAGGTTCAAATAATGATAACGCT
AATATGAAGCATAGTATTGTTAGCCGTATTAGTACTTTGGACCGAGATGGTGATGGTTTAGTAGATCATTTGTATTTTGG
CGATTTAGGCGGACAAGTCTTTCGTGTAGATCTTAATAATAATCAGACTCAAACTAACTCGACTTATAGTAGTTTCGGTA
TACGAGTTGTGAGATTGGCAAATCTGGCAACAAACGATACAACAAATGATAGTGGAAATGATTACACAGCTGGAAATGCC
CCTCGTTTTTATGAGCCGCCTACCGTAACAATTCATGATTATGGTGTTCGCTCATTTATTACTGTTGGTATCGCTTCTGG
TGATCGAAGTACACCACTAGATGTTTATCCAATTATTGGCCGGGAAGGTATGTCTCCTAGTACGGCGCTTAGTGGTCGAC
CTGTAAATAATGTTTATGGAATTATTGATAGAGACTTTATAAAAAAGAATTTAATGTCGTTAAGTGATAGTCAGCTTGAA
ACTAAGGATCTTATTCGCTCAAATCTGCGGAAAAACCCACAAATATTAAGAGCAGGCGAAACGAGCGTAGGGCAAGTTTT
CTTTCCAAGTACGGGTACAGGTCAGGCAGGTTGGTACCGATCACTTTCTAGTACGAGTAATGGTACTGAAAAAGCTGATA
ATAGCTTCCGTATTAAAGGGGGAATGAAAGCCTTTGAAGAACCAATAGCAATTACAGGTAATTTAATCGTTCCTGTCTAT
GATCCTCAAGGAACAGGTATTGTTGCGTCAGACCCTTGTTTGCCACGTGTAGTCGGTGAAACAGATCGACAAACTTATTG
TCTACCATTTGGAGTGTGTCTGAATACTGATGGATCGATTAATCATAATAAGGAAGATAATAGTGGTTTTGGAACAGATG
GATCAAAGAACCTAAATGTAATTGGTTCAGGGGTTCGCAATATTACGTTTGTGCCTAGTGAAGATAATCCATCTCCGCAA
AACAGTTGTGGAAAATTAAAGCTATCTGGTAATGAGCAAGGAACAGGGCAGTGGCAATGCACAAGCTATTTGATCCCTGC
ACGCTGGTATGAGCGTTATCGCTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(824-1084)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

76.033

78.121

0.594