Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   J7W01_RS10180 Genome accession   NZ_CP072525
Coordinates   2055498..2056628 (+) Length   376 a.a.
NCBI ID   WP_021481447.1    Uniprot ID   -
Organism   Bacillus subtilis strain YB-04     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2050498..2061628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7W01_RS10150 (J7W01_10150) yopB 2051264..2051490 (-) 227 Protein_1959 helix-turn-helix transcriptional regulator -
  J7W01_RS10155 (J7W01_10155) - 2051691..2052392 (-) 702 WP_038829963.1 hypothetical protein -
  J7W01_RS10160 (J7W01_10160) - 2053038..2053403 (+) 366 WP_038829962.1 hypothetical protein -
  J7W01_RS10165 (J7W01_10165) - 2053584..2053859 (+) 276 Protein_1962 SOS response-associated peptidase family protein -
  J7W01_RS10170 (J7W01_10170) - 2054133..2054507 (+) 375 WP_021481445.1 YoqO family protein -
  J7W01_RS21650 (J7W01_10175) - 2055219..2055365 (+) 147 Protein_1964 phage holin -
  J7W01_RS10180 (J7W01_10180) rapC 2055498..2056628 (+) 1131 WP_021481447.1 tetratricopeptide repeat protein Regulator
  J7W01_RS10185 (J7W01_10185) - 2056618..2056761 (+) 144 WP_153801665.1 hypothetical protein -
  J7W01_RS21465 - 2056915..2057115 (-) 201 WP_021481449.1 hypothetical protein -
  J7W01_RS21470 - 2057337..2057711 (-) 375 Protein_1968 UV damage repair protein UvrX -
  J7W01_RS10195 (J7W01_10195) - 2057709..2057864 (-) 156 Protein_1969 T7SS effector LXG polymorphic toxin -
  J7W01_RS10200 (J7W01_10200) yobM 2057965..2058522 (-) 558 WP_038829958.1 SMI1/KNR4 family protein -
  J7W01_RS10205 (J7W01_10205) aoxN 2058650..2060086 (+) 1437 WP_120363441.1 flavin monoamine oxidase family protein -
  J7W01_RS10210 (J7W01_10210) csaA 2060336..2060668 (-) 333 WP_032725963.1 chaperone CsaA -
  J7W01_RS10215 (J7W01_10215) yobQ 2060733..2061458 (-) 726 WP_072175277.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44393.16 Da        Isoelectric Point: 5.8915

>NTDB_id=483828 J7W01_RS10180 WP_021481447.1 2055498..2056628(+) (rapC) [Bacillus subtilis strain YB-04]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=483828 J7W01_RS10180 WP_021481447.1 2055498..2056628(+) (rapC) [Bacillus subtilis strain YB-04]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAGAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455