Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   IC776_RS16570 Genome accession   NZ_CP061646
Coordinates   3569481..3569954 (-) Length   157 a.a.
NCBI ID   WP_134262475.1    Uniprot ID   A0A5E9PH03
Organism   Acinetobacter seifertii strain AS39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3564481..3574954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC776_RS16555 (IC776_16555) pilX 3567117..3567932 (-) 816 WP_191012232.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IC776_RS16560 (IC776_16560) pilW 3567929..3568927 (-) 999 WP_191012233.1 PilW family protein Machinery gene
  IC776_RS16565 (IC776_16565) pilV 3568927..3569487 (-) 561 WP_134262473.1 type IV pilus modification protein PilV Machinery gene
  IC776_RS16570 (IC776_16570) fimU 3569481..3569954 (-) 474 WP_134262475.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IC776_RS16575 (IC776_16575) ispH 3570122..3571072 (-) 951 WP_004705229.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IC776_RS16580 (IC776_16580) gmk 3571195..3571824 (+) 630 WP_039250522.1 guanylate kinase -
  IC776_RS16585 (IC776_16585) rpoZ 3571897..3572175 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IC776_RS16590 (IC776_16590) - 3572214..3572343 (+) 130 Protein_3254 hypothetical protein -
  IC776_RS16595 (IC776_16595) - 3572383..3574488 (+) 2106 WP_004705224.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16875.48 Da        Isoelectric Point: 9.3090

>NTDB_id=483829 IC776_RS16570 WP_134262475.1 3569481..3569954(-) (fimU) [Acinetobacter seifertii strain AS39]
MRGIIPQEGFTLIELMVTIAVMAIIAMIAAPSMSNLLESKRLDTNQRDLISTLSEAKSQAVLGRQNVSVNLNSAASNTAT
SLNWQPTSNNTLTLKNIAADLTQSSLTTTTLTFNANGVVSNITQDALISICNSKINKKKNFILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=483829 IC776_RS16570 WP_134262475.1 3569481..3569954(-) (fimU) [Acinetobacter seifertii strain AS39]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCCTAATTGAGCTCATGGTAACAATTGCAGTCATGGCAATTATTGCAAT
GATAGCAGCACCATCTATGTCAAATTTATTAGAAAGTAAACGTTTAGATACAAATCAAAGAGATTTAATTAGCACCCTAT
CTGAGGCAAAAAGTCAGGCTGTGCTTGGACGTCAGAACGTTTCAGTCAATTTAAATTCAGCAGCGTCTAATACGGCAACT
TCATTAAATTGGCAACCAACTTCGAATAATACTCTAACGCTAAAAAATATAGCTGCTGATCTTACACAAAGTTCTTTAAC
TACCACTACTTTAACATTTAATGCAAATGGGGTAGTGAGTAATATTACTCAAGATGCGCTTATATCTATATGTAACTCAA
AAATAAATAAAAAGAAAAATTTCATACTTACAAAACTTGGAACTTTAGTTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-133)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E9PH03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879