Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IC780_RS18780 Genome accession   NZ_CP061629
Coordinates   3900805..3901392 (-) Length   195 a.a.
NCBI ID   WP_151792171.1    Uniprot ID   A0A7H2QBJ7
Organism   Acinetobacter seifertii strain AS47     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3895805..3906392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC780_RS18770 (IC780_18765) - 3897874..3899430 (-) 1557 WP_071210166.1 site-specific integrase -
  IC780_RS18775 (IC780_18770) - 3899423..3900649 (-) 1227 WP_071210167.1 site-specific integrase -
  IC780_RS18780 (IC780_18775) ssb 3900805..3901392 (-) 588 WP_151792171.1 single-stranded DNA-binding protein Machinery gene
  IC780_RS18785 (IC780_18780) - 3901443..3902807 (-) 1365 WP_004705005.1 MFS transporter -
  IC780_RS18790 (IC780_18785) - 3902954..3904036 (-) 1083 WP_004705003.1 DUF475 domain-containing protein -
  IC780_RS18795 (IC780_18790) tenA 3904299..3904973 (+) 675 WP_039255497.1 thiaminase II -
  IC780_RS18800 (IC780_18795) - 3905038..3905409 (+) 372 WP_004704999.1 MerR family transcriptional regulator -
  IC780_RS18805 (IC780_18800) - 3905513..3906319 (+) 807 WP_077168858.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21167.93 Da        Isoelectric Point: 6.4822

>NTDB_id=483709 IC780_RS18780 WP_151792171.1 3900805..3901392(-) (ssb) [Acinetobacter seifertii strain AS47]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGSNDFNQPRFNAPQQGGGYQNNNNQGGGYGQNNGGGYGGQG
GFGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=483709 IC780_RS18780 WP_151792171.1 3900805..3901392(-) (ssb) [Acinetobacter seifertii strain AS47]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCGATCGCGACAAGTGAATCTTGGACTGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTACATTGAAGGT
TCATTACGTACACGTCAATGGACAGATCAAAATGGCCAAGAGCGTTATACGACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCAGTAATGATTTTAATCAACCACGTTTTAATGCACCTCAAC
AAGGTGGCGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGTCAAAACAATGGCGGTGGTTATGGTGGCCAAGGT
GGTTTCGGTAATGGTGGAAACAGCCCGCAAGGTGGTGGATTTGCTCCTAAAGCGCCGCAACAACCAGCGTCTGCACCAGC
TGATTTAGACGATGATTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2QBJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.208

100

0.544
  ssb Vibrio cholerae strain A1552

44.335

100

0.462
  ssb Neisseria gonorrhoeae MS11

38.119

100

0.395
  ssb Neisseria meningitidis MC58

37.931

100

0.395