Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   IC781_RS16785 Genome accession   NZ_CP061626
Coordinates   3544437..3545435 (-) Length   332 a.a.
NCBI ID   WP_191010544.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS48     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3539437..3550435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC781_RS16775 (IC781_16775) pilY1 3539441..3543625 (-) 4185 WP_191010542.1 PilC/PilY family type IV pilus protein Machinery gene
  IC781_RS16780 (IC781_16780) pilX 3543625..3544440 (-) 816 WP_191010543.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IC781_RS16785 (IC781_16785) pilW 3544437..3545435 (-) 999 WP_191010544.1 PilW family protein Machinery gene
  IC781_RS16790 (IC781_16790) pilV 3545435..3545995 (-) 561 WP_134262473.1 type IV pilus modification protein PilV Machinery gene
  IC781_RS16795 (IC781_16795) fimU 3545989..3546462 (-) 474 WP_191010545.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IC781_RS16800 (IC781_16800) ispH 3546629..3547579 (-) 951 WP_004705229.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IC781_RS16805 (IC781_16805) gmk 3547702..3548331 (+) 630 WP_191001035.1 guanylate kinase -
  IC781_RS16810 (IC781_16810) rpoZ 3548404..3548682 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IC781_RS16815 (IC781_16815) - 3548721..3548851 (+) 131 Protein_3303 hypothetical protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 35705.11 Da        Isoelectric Point: 6.2394

>NTDB_id=483660 IC781_RS16785 WP_191010544.1 3544437..3545435(-) (pilW) [Acinetobacter seifertii strain AS48]
MSRSFLEKQQGFTLIELIVALALGLILVAAATQLFIGGILSSRLQKANSEIQDSGIFGLDYIVRDIRLVNYGNIVNPQLN
DTTPWGGVVLTGSTATNNNNVNFVPSTGSNTYIADALLSRGAGDTVSTLNNQWKGLSNIQNSSNATTQSDQLTIQFIAPS
NMTNCEGVNVLAGDLVVERYFLRLDNNGSSQQDYALACDANTPSTTPTAQPTSVDGFGDAGQIILPRIDHFHVLLGAKNA
AGNFAYYTIPQYRVAAQAARDATPTQVAPRILSIQISVLARSTNNAQNKAVDPNQTFVMLDQTVHASDTSTRFLRRVYST
TIALRNAMGEKL

Nucleotide


Download         Length: 999 bp        

>NTDB_id=483660 IC781_RS16785 WP_191010544.1 3544437..3545435(-) (pilW) [Acinetobacter seifertii strain AS48]
ATGAGCCGATCATTTTTAGAAAAGCAGCAAGGATTTACCCTAATTGAACTTATTGTTGCTTTGGCTCTAGGTTTAATTCT
TGTTGCAGCTGCTACCCAATTGTTTATTGGTGGAATTTTATCAAGTCGTCTACAAAAAGCGAATTCTGAAATACAAGATA
GTGGTATTTTTGGTCTGGATTATATTGTACGTGACATACGACTTGTCAATTATGGAAATATTGTAAATCCTCAGTTAAAC
GATACTACTCCTTGGGGAGGAGTCGTGCTAACGGGTTCTACTGCTACCAATAATAACAATGTAAATTTTGTGCCTAGTAC
AGGGTCTAATACTTATATAGCAGATGCTTTATTAAGCCGTGGTGCGGGCGATACAGTAAGTACCTTAAATAACCAGTGGA
AGGGCCTTTCAAATATACAGAATAGTTCAAATGCAACTACACAGAGTGACCAGCTTACTATCCAATTCATTGCCCCCTCT
AATATGACAAATTGTGAAGGCGTAAATGTTTTGGCGGGTGATCTTGTTGTAGAACGCTATTTTTTACGTCTCGATAATAA
TGGGAGTTCACAACAAGATTATGCCTTGGCATGTGATGCAAATACACCTTCTACTACACCTACAGCCCAGCCAACATCAG
TCGATGGGTTTGGAGATGCGGGTCAAATTATATTGCCACGTATTGATCATTTCCATGTTCTATTAGGTGCGAAAAATGCA
GCTGGTAATTTTGCTTATTACACTATTCCCCAATATCGAGTGGCTGCACAAGCTGCAAGAGATGCGACTCCTACACAAGT
AGCTCCGCGTATCTTGTCTATACAGATTTCTGTATTAGCACGTTCTACCAATAATGCTCAAAACAAAGCAGTCGATCCTA
ATCAAACTTTTGTAATGTTAGATCAAACAGTACATGCCTCAGATACCAGTACACGATTCTTGCGACGCGTTTATAGCACA
ACAATTGCTTTACGTAATGCAATGGGGGAAAAACTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(180-326)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

83.784

100

0.84
  comB Acinetobacter baylyi ADP1

34.682

100

0.361