Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   IC788_RS17365 Genome accession   NZ_CP061596
Coordinates   3691153..3692283 (+) Length   376 a.a.
NCBI ID   WP_191000844.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS59     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3686153..3697283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC788_RS17340 (IC788_17340) - 3686416..3686622 (-) 207 WP_039252952.1 hypothetical protein -
  IC788_RS17345 (IC788_17345) - 3686676..3688790 (-) 2115 WP_191000843.1 TonB-dependent copper receptor -
  IC788_RS17350 (IC788_17350) - 3688864..3689289 (-) 426 WP_004705923.1 DUF2946 family protein -
  IC788_RS17355 (IC788_17355) def 3689325..3689855 (-) 531 WP_004705924.1 peptide deformylase -
  IC788_RS17360 (IC788_17360) tsaP 3689978..3691132 (+) 1155 WP_077166210.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  IC788_RS17365 (IC788_17365) dprA 3691153..3692283 (+) 1131 WP_191000844.1 DNA-processing protein DprA Machinery gene
  IC788_RS17370 (IC788_17370) - 3692334..3692903 (+) 570 WP_174741068.1 L-threonylcarbamoyladenylate synthase -
  IC788_RS17375 (IC788_17375) - 3693294..3694214 (-) 921 WP_191000845.1 DMT family transporter -
  IC788_RS17380 (IC788_17380) - 3694321..3694974 (-) 654 WP_191000846.1 TetR/AcrR family transcriptional regulator -
  IC788_RS17385 (IC788_17385) - 3695110..3696324 (+) 1215 WP_191000847.1 MFS transporter -
  IC788_RS17390 (IC788_17390) - 3696345..3697109 (+) 765 WP_191000848.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41876.53 Da        Isoelectric Point: 6.4979

>NTDB_id=483462 IC788_RS17365 WP_191000844.1 3691153..3692283(+) (dprA) [Acinetobacter seifertii strain AS59]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGDCEKATQPDGLAKWQSLGLHANHLKRLNEFQTAQGQTEFERLIQQV
QQHTDFILTPDDVGYPTQLLPYTDHPPVIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYISSGLAYG
IDEAAHQGASVHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIISEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKIVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQNSTEEAIVSCTPEIP
EHLINLYQSLDWVGQNIDQLVLHHSQPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=483462 IC788_RS17365 WP_191000844.1 3691153..3692283(+) (dprA) [Acinetobacter seifertii strain AS59]
ATGCTTACCCAACTTTCTTCACACCATTACCACACACTTAAAGTGTGGTATTTGGTGCAACACTCATTAGTTAGCTTCAA
AAAAATTATTGATTATTTTGGAGACTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGCAATCTCTTGGCTTAC
ATGCTAATCACTTAAAGCGTCTAAATGAGTTTCAAACGGCGCAAGGTCAAACCGAGTTTGAACGACTTATACAACAAGTT
CAGCAGCATACTGATTTTATTTTGACACCAGATGATGTTGGTTATCCAACTCAATTACTCCCTTATACAGATCATCCACC
TGTTATTTTTGGAAAAGGTCAGGCACAAGCATTATTACAACCGCAAATTGCGATTGTCGGTAGCCGAAAACCTAGCCCAC
ATGGTCGTCAGGTGGCTTATGATTTTGCCTATTATTTAAGTGAAAAAGGTTTTTATATAAGTAGCGGCTTGGCATACGGC
ATTGATGAAGCAGCTCATCAAGGTGCATCTGTTCATCAACGTACGATAGCAGTGACAGGTACAGGTTTAGACAGTACCTA
TCCAGCTCAAAATAAAAAATTGGCAGAACATATTCTGGCTCAGAACGGCGCCATCATTAGTGAGTTTTTACCGGGAACAC
CACCACTACAGCAGCATTTTCCACGTAGAAACCGAATTGTTAGCGGTCTGAGTTTAGGCGTATTAGTTGTAGAAGCGACT
TTAAAAAGTGGCTCCCTCATTACTGCCAATAAAGCAGCTGAGCAAGGCAAAATCGTATTTGCCATTCCCGGTCATATTTA
CAGTGAATTTCATCAAGGTTGCCATCAACTTATTCGTGAAGGTGCAATTTTAGTAGATCACCCTGAACAAATTATTGAAG
ACCTCGCCCTACCCACCCAATGGCAGAGCCAACAAAACTCAACAGAGGAGGCAATCGTTTCTTGCACCCCAGAAATTCCA
GAGCATTTGATTAATCTTTATCAGTCTTTAGACTGGGTAGGCCAAAATATTGACCAGCTTGTTTTGCATCATTCACAACC
TGTTTCTGAACTCACCTCATCACTGATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGATTGTATTTACGTT
GTCGTTCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

91.489

100

0.915

  dprA Acinetobacter baumannii D1279779

91.489

100

0.915

  dprA Acinetobacter baylyi ADP1

72.178

100

0.731

  dprA Vibrio cholerae strain A1552

43.202

88.032

0.38