Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   IC788_RS01625 Genome accession   NZ_CP061596
Coordinates   344867..345340 (+) Length   157 a.a.
NCBI ID   WP_191001036.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339867..350340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC788_RS01600 (IC788_01600) - 340333..342438 (-) 2106 WP_191001034.1 RelA/SpoT family protein -
  IC788_RS01605 (IC788_01605) - 342478..342608 (-) 131 Protein_308 hypothetical protein -
  IC788_RS01610 (IC788_01610) rpoZ 342647..342925 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IC788_RS01615 (IC788_01615) gmk 342998..343627 (-) 630 WP_191001035.1 guanylate kinase -
  IC788_RS01620 (IC788_01620) ispH 343750..344700 (+) 951 WP_004705229.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IC788_RS01625 (IC788_01625) fimU 344867..345340 (+) 474 WP_191001036.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IC788_RS01630 (IC788_01630) pilV 345334..345894 (+) 561 WP_191001037.1 type IV pilus modification protein PilV Machinery gene
  IC788_RS01635 (IC788_01635) pilW 345894..346892 (+) 999 WP_191001038.1 PilW family protein Machinery gene
  IC788_RS01640 (IC788_01640) pilX 346889..347704 (+) 816 WP_174743607.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IC788_RS18585 - 347704..347889 (+) 186 Protein_316 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16905.50 Da        Isoelectric Point: 9.3090

>NTDB_id=483427 IC788_RS01625 WP_191001036.1 344867..345340(+) (fimU) [Acinetobacter seifertii strain AS59]
MRGIIPQEGFTLIELMVTIAVMAIITMIAAPSMSNLLESKRLDTNQRDLISTLSEAKSQAVLGRQNVSVNLNSAASNTAT
SLNWQPTSNNTLTLKNIAADLTQSSLTTTTLTFNANGVVSNITQDALISICNSKINKKKNFILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=483427 IC788_RS01625 WP_191001036.1 344867..345340(+) (fimU) [Acinetobacter seifertii strain AS59]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCCTAATTGAGCTCATGGTAACAATTGCAGTCATGGCAATTATTACAAT
GATAGCAGCACCATCTATGTCGAATTTATTAGAAAGTAAACGTTTAGATACAAATCAAAGAGATTTAATTAGCACCCTAT
CTGAGGCAAAAAGTCAGGCTGTGCTTGGACGTCAGAATGTTTCAGTCAATTTAAATTCAGCAGCGTCTAATACGGCAACT
TCATTAAATTGGCAACCAACTTCGAATAATACTCTAACGCTAAAAAATATAGCTGCTGATCTTACACAAAGTTCTTTAAC
TACCACTACTTTAACATTTAATGCAAATGGGGTAGTGAGTAATATTACTCAAGATGCGCTTATATCTATATGTAACTCAA
AAATAAATAAAAAGAAAAATTTCATACTTACAAAACTTGGAACTTTAGTTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-133)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.261

100

0.873