Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IC788_RS01010 Genome accession   NZ_CP061596
Coordinates   222867..223454 (+) Length   195 a.a.
NCBI ID   WP_049065869.1    Uniprot ID   A0A2T5R1E9
Organism   Acinetobacter seifertii strain AS59     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 217867..228454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC788_RS00985 (IC788_00985) - 217940..218746 (-) 807 WP_191000993.1 SDR family NAD(P)-dependent oxidoreductase -
  IC788_RS00990 (IC788_00990) - 218850..219221 (-) 372 WP_004704999.1 MerR family transcriptional regulator -
  IC788_RS00995 (IC788_00995) tenA 219286..219960 (-) 675 WP_039255497.1 thiaminase II -
  IC788_RS01000 (IC788_01000) - 220223..221305 (+) 1083 WP_004705003.1 DUF475 domain-containing protein -
  IC788_RS01005 (IC788_01005) - 221452..222816 (+) 1365 WP_191000994.1 MFS transporter -
  IC788_RS01010 (IC788_01010) ssb 222867..223454 (+) 588 WP_049065869.1 single-stranded DNA-binding protein Machinery gene
  IC788_RS01015 (IC788_01015) - 223495..223818 (-) 324 WP_191000995.1 AzlD domain-containing protein -
  IC788_RS01020 (IC788_01020) - 223815..224510 (-) 696 WP_191000996.1 AzlC family ABC transporter permease -
  IC788_RS01025 (IC788_01025) - 224579..225127 (+) 549 WP_191000997.1 helix-turn-helix domain-containing protein -
  IC788_RS01030 (IC788_01030) - 225433..226875 (+) 1443 WP_004705034.1 amino acid permease -
  IC788_RS01035 (IC788_01035) - 226938..228437 (-) 1500 WP_134262571.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21194.95 Da        Isoelectric Point: 6.4822

>NTDB_id=483420 IC788_RS01010 WP_049065869.1 222867..223454(+) (ssb) [Acinetobacter seifertii strain AS59]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNNQGGGYGQNNGGGYGNQG
GFGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=483420 IC788_RS01010 WP_049065869.1 222867..223454(+) (ssb) [Acinetobacter seifertii strain AS59]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGTTC
GTTGACCCAATTTTCGATCGCGACAAGTGAATCTTGGACTGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTACATTGAAGGT
TCATTACGTACACGTCAATGGACAGATCAAAATGGCCAAGAGCGTTATACGACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGCGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGTCAAAACAATGGTGGTGGTTATGGTAATCAAGGT
GGTTTCGGTAATGGTGGCAATAGCCCGCAAGGTGGTGGTTTTGCTCCTAAAGCGCCGCAACAACCAGCATCTGCACCAGC
TGATTTAGACGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T5R1E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.691

100

0.549
  ssb Vibrio cholerae strain A1552

45

100

0.462
  ssb Neisseria meningitidis MC58

36.869

100

0.374
  ssb Neisseria gonorrhoeae MS11

36.869

100

0.374