Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IC796_RS01065 Genome accession   NZ_CP061561
Coordinates   236454..237041 (+) Length   195 a.a.
NCBI ID   WP_151682841.1    Uniprot ID   A0A7H2QLW1
Organism   Acinetobacter seifertii strain AS73     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 231454..242041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC796_RS01040 (IC796_01040) - 231527..232333 (-) 807 WP_151682844.1 SDR family NAD(P)-dependent oxidoreductase -
  IC796_RS01045 (IC796_01045) - 232437..232808 (-) 372 WP_019458498.1 MerR family transcriptional regulator -
  IC796_RS01050 (IC796_01050) tenA 232873..233547 (-) 675 WP_151682843.1 thiaminase II -
  IC796_RS01055 (IC796_01055) - 233810..234892 (+) 1083 WP_151682842.1 DUF475 domain-containing protein -
  IC796_RS01060 (IC796_01060) - 235039..236403 (+) 1365 WP_004705005.1 MFS transporter -
  IC796_RS01065 (IC796_01065) ssb 236454..237041 (+) 588 WP_151682841.1 single-stranded DNA-binding protein Machinery gene
  IC796_RS01070 (IC796_01070) - 237082..237405 (-) 324 WP_151682840.1 AzlD domain-containing protein -
  IC796_RS01075 (IC796_01075) - 237402..238097 (-) 696 WP_151682839.1 AzlC family ABC transporter permease -
  IC796_RS01080 (IC796_01080) - 238166..238714 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  IC796_RS01085 (IC796_01085) - 239020..240462 (+) 1443 WP_004705034.1 amino acid permease -
  IC796_RS01090 (IC796_01090) - 240527..242027 (-) 1501 Protein_212 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21210.95 Da        Isoelectric Point: 6.4822

>NTDB_id=483190 IC796_RS01065 WP_151682841.1 236454..237041(+) (ssb) [Acinetobacter seifertii strain AS73]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFSGGNDFNQPRFNAPQQGGGYQNNNNQGGGYGQNNGGGYGNQG
GFGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=483190 IC796_RS01065 WP_151682841.1 236454..237041(+) (ssb) [Acinetobacter seifertii strain AS73]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCGATCGCGACAAGTGAATCTTGGACTGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTACATTGAAGGT
TCATTACGTACACGTCAATGGACAGATCAAAATGGCCAAGAGCGTTATACGACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCTCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGCGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGTCAAAACAATGGCGGTGGTTATGGTAATCAAGGT
GGTTTTGGTAATGGTGGCAACAGCCCGCAAGGTGGTGGATTTGCTCCTAAAGCGCCGCAACAACCAGCATCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2QLW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.691

100

0.549
  ssb Vibrio cholerae strain A1552

45

100

0.462
  ssb Neisseria meningitidis MC58

37.563

100

0.379
  ssb Neisseria gonorrhoeae MS11

37.563

100

0.379