Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   IC798_RS17585 Genome accession   NZ_CP061551
Coordinates   3718924..3720054 (+) Length   376 a.a.
NCBI ID   WP_191103145.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS78     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3713924..3725054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC798_RS17560 (IC798_17560) - 3714185..3714391 (-) 207 WP_039252952.1 hypothetical protein -
  IC798_RS17565 (IC798_17565) - 3714444..3716558 (-) 2115 WP_191107142.1 TonB-dependent copper receptor -
  IC798_RS17570 (IC798_17570) - 3716632..3717060 (-) 429 WP_191107143.1 DUF2946 family protein -
  IC798_RS17575 (IC798_17575) def 3717096..3717626 (-) 531 WP_004705924.1 peptide deformylase -
  IC798_RS17580 (IC798_17580) tsaP 3717749..3718903 (+) 1155 WP_077166210.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  IC798_RS17585 (IC798_17585) dprA 3718924..3720054 (+) 1131 WP_191103145.1 DNA-processing protein DprA Machinery gene
  IC798_RS17590 (IC798_17590) - 3720105..3720674 (+) 570 WP_174741068.1 L-threonylcarbamoyladenylate synthase -
  IC798_RS17595 (IC798_17595) - 3721065..3721985 (-) 921 WP_191107144.1 DMT family transporter -
  IC798_RS17600 (IC798_17600) - 3722092..3722745 (-) 654 WP_077164355.1 TetR/AcrR family transcriptional regulator -
  IC798_RS17605 (IC798_17605) - 3722881..3724095 (+) 1215 WP_191107145.1 MFS transporter -
  IC798_RS17610 (IC798_17610) - 3724116..3724880 (+) 765 WP_191107146.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41846.50 Da        Isoelectric Point: 6.4979

>NTDB_id=483144 IC798_RS17585 WP_191103145.1 3718924..3720054(+) (dprA) [Acinetobacter seifertii strain AS78]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGDCEKATQPDGLAKWQSLGLHANHLKRLNEFQTAQGQTEFERLIQQV
QQHTDFILTPDDAGYPTQLLPYIDHPPVIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASVHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIISEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKIVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQNSTEEAIVSCTPEIP
EHLINLYQSLDWVGQNIDQLVLHHSQPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=483144 IC798_RS17585 WP_191103145.1 3718924..3720054(+) (dprA) [Acinetobacter seifertii strain AS78]
ATGCTTACCCAACTTTCTTCACACCATTACCACACACTTAAAGTGTGGTATTTGGTGCAACACTCGTTAGTTAGCTTCAA
AAAAATTATTGATTATTTTGGAGACTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGCAATCTCTTGGCTTAC
ATGCTAATCACTTAAAGCGTCTAAACGAGTTTCAAACGGCGCAAGGTCAAACCGAGTTTGAACGACTTATACAACAAGTT
CAGCAACATACTGATTTTATTTTAACGCCAGATGATGCTGGCTATCCAACTCAATTACTCCCTTATATAGATCATCCACC
TGTTATTTTTGGAAAAGGTCAGGCACAAGCATTATTACAACCGCAAATTGCGATTGTCGGTAGCCGAAAACCTAGCCCAC
ATGGTCGTCAGGTGGCTTATGATTTTGCCTATTATTTAAGTGAAAAAGGTTTTTATGTAAGTAGCGGCTTGGCATATGGC
ATTGATGAAGCAGCTCATCAAGGTGCATCTGTTCATCAACGTACGATAGCGGTGACAGGTACAGGTTTAGACAGTACCTA
TCCAGCTCAAAATAAAAAATTGGCAGAACATATTTTGGCTCAAAACGGCGCCATCATTAGTGAGTTTTTACCGGGAACAC
CACCACTACAGCAGCATTTTCCACGTAGAAACCGAATTGTTAGCGGTCTGAGTTTAGGCGTATTAGTTGTAGAAGCGACT
TTAAAAAGTGGCTCCCTCATTACTGCCAATAAAGCAGCTGAGCAAGGCAAAATCGTATTTGCCATTCCCGGTCATATTTA
CAGTGAATTTCATCAAGGTTGCCATCAACTTATTCGTGAAGGTGCAATTTTAGTCGATCACCCTGAACAAATTATTGAAG
ACCTCGCCCTACCCACCCAATGGCAGAGCCAACAAAACTCAACAGAGGAGGCAATCGTTTCTTGCACCCCAGAAATTCCA
GAGCATTTGATTAATCTTTATCAGTCTTTAGACTGGGTAGGCCAAAATATTGACCAGCTTGTTTTGCATCATTCACAACC
TGTTTCTGAACTCACCTCATCATTGATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGATTGTATTTACGTT
GTCGTTCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

90.957

100

0.91

  dprA Acinetobacter baumannii D1279779

90.957

100

0.91

  dprA Acinetobacter baylyi ADP1

71.916

100

0.729

  dprA Vibrio cholerae strain A1552

43.505

88.032

0.383