Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IC798_RS01045 Genome accession   NZ_CP061551
Coordinates   236060..236647 (+) Length   195 a.a.
NCBI ID   WP_004705007.1    Uniprot ID   N8SBP5
Organism   Acinetobacter seifertii strain AS78     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 231060..241647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC798_RS01020 (IC798_01020) - 231132..231938 (-) 807 WP_191107291.1 SDR family oxidoreductase -
  IC798_RS01025 (IC798_01025) - 232042..232413 (-) 372 WP_077163694.1 MerR family transcriptional regulator -
  IC798_RS01030 (IC798_01030) tenA 232479..233153 (-) 675 WP_039255497.1 thiaminase II -
  IC798_RS01035 (IC798_01035) - 233416..234498 (+) 1083 WP_004705003.1 DUF475 domain-containing protein -
  IC798_RS01040 (IC798_01040) - 234645..236009 (+) 1365 WP_191107292.1 MFS transporter -
  IC798_RS01045 (IC798_01045) ssb 236060..236647 (+) 588 WP_004705007.1 single-stranded DNA-binding protein Machinery gene
  IC798_RS01050 (IC798_01050) - 236688..237011 (-) 324 WP_191107293.1 AzlD domain-containing protein -
  IC798_RS01055 (IC798_01055) - 237008..237703 (-) 696 WP_191107294.1 AzlC family ABC transporter permease -
  IC798_RS01060 (IC798_01060) - 237772..238320 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  IC798_RS01065 (IC798_01065) - 238626..240068 (+) 1443 WP_004705034.1 amino acid permease -
  IC798_RS01070 (IC798_01070) - 240133..241632 (-) 1500 WP_191107295.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21137.90 Da        Isoelectric Point: 6.4822

>NTDB_id=483111 IC798_RS01045 WP_004705007.1 236060..236647(+) (ssb) [Acinetobacter seifertii strain AS78]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNNQGGGYGQNNGGGYGGQG
GFGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=483111 IC798_RS01045 WP_004705007.1 236060..236647(+) (ssb) [Acinetobacter seifertii strain AS78]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGTTC
GTTGACCCAATTTTCGATCGCGACAAGTGAATCTTGGACTGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTACATTGAAGGT
TCATTACGTACACGTCAATGGACAGATCAAAATGGCCAAGAGCGTTATACGACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGGGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGCGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGTCAAAACAATGGCGGTGGTTATGGTGGCCAAGGT
GGTTTCGGTAATGGTGGAAACAGCCCGCAAGGTGGTGGATTTGCTCCTAAAGCGCCGCAACAACCAGCATCTGCACCAGC
TGATTTAGACGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8SBP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.691

100

0.549
  ssb Vibrio cholerae strain A1552

44.335

100

0.462
  ssb Neisseria meningitidis MC58

37.879

100

0.385
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385