Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IC799_RS01570 Genome accession   NZ_CP061550
Coordinates   335657..336184 (+) Length   175 a.a.
NCBI ID   WP_004705193.1    Uniprot ID   N8SH39
Organism   Acinetobacter seifertii strain AS79     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 330657..341184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC799_RS01555 (IC799_01555) pilM 333207..334265 (+) 1059 WP_039251099.1 pilus assembly protein PilM Machinery gene
  IC799_RS01560 (IC799_01560) pilN 334265..334909 (+) 645 WP_077163636.1 PilN domain-containing protein Machinery gene
  IC799_RS01565 (IC799_01565) pilO 334906..335646 (+) 741 WP_191012245.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC799_RS01570 (IC799_01570) pilP 335657..336184 (+) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  IC799_RS01575 (IC799_01575) pilQ 336246..338372 (+) 2127 WP_191012244.1 type IV pilus secretin PilQ family protein Machinery gene
  IC799_RS01580 (IC799_01580) aroK 338384..338953 (+) 570 WP_004705195.1 shikimate kinase AroK -
  IC799_RS01585 (IC799_01585) aroB 338982..340064 (+) 1083 WP_191012243.1 3-dehydroquinate synthase -
  IC799_RS01590 (IC799_01590) - 340080..340954 (+) 875 Protein_306 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19340.53 Da        Isoelectric Point: 9.4007

>NTDB_id=483067 IC799_RS01570 WP_004705193.1 335657..336184(+) (pilP) [Acinetobacter seifertii strain AS79]
MKIKQITLYILACAALVGCDSRIDAVNQQMANIRNQPPLAIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRTPQPLESYALEALSMKGSMRNSRGQILALIQTPDHQVERVQVGNYMGMNQGRITQISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=483067 IC799_RS01570 WP_004705193.1 335657..336184(+) (pilP) [Acinetobacter seifertii strain AS79]
ATGAAAATTAAGCAAATTACTCTTTATATTTTGGCTTGTGCTGCGCTTGTAGGATGTGATTCAAGAATTGATGCAGTCAA
TCAGCAAATGGCAAATATCCGTAATCAACCGCCGCTAGCTATTGAACCAGCACCTATTTTTACTCCTGTACCACAATTTA
ATTATGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGCTCACTGGCTGCTGAACTCAAAATTATGGCTGGAAAACGT
GTTTATCCAAATTTCTCACGTACGCCACAGCCATTAGAAAGTTATGCACTTGAGGCTTTAAGTATGAAAGGAAGCATGCG
CAATAGCCGTGGTCAAATATTAGCTCTCATCCAGACGCCAGATCATCAAGTTGAACGGGTACAAGTGGGCAATTATATGG
GCATGAATCAGGGCCGTATTACCCAGATTAGCCCGACTCAGATTGATTTGGTTGAGATTGTGCCAGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8SH39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

94.286

100

0.943
  comL Acinetobacter baylyi ADP1

70.69

99.429

0.703