Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   IC799_RS01560 Genome accession   NZ_CP061550
Coordinates   334265..334909 (+) Length   214 a.a.
NCBI ID   WP_077163636.1    Uniprot ID   A0A2M8MMB9
Organism   Acinetobacter seifertii strain AS79     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 329265..339909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC799_RS01540 (IC799_01540) - 329313..329645 (+) 333 WP_191012247.1 hypothetical protein -
  IC799_RS01545 (IC799_01545) - 329654..330472 (+) 819 WP_396021016.1 putative RNA methyltransferase -
  IC799_RS01550 (IC799_01550) ponA 330490..333045 (-) 2556 WP_174722665.1 penicillin-binding protein PBP1a -
  IC799_RS01555 (IC799_01555) pilM 333207..334265 (+) 1059 WP_039251099.1 pilus assembly protein PilM Machinery gene
  IC799_RS01560 (IC799_01560) pilN 334265..334909 (+) 645 WP_077163636.1 PilN domain-containing protein Machinery gene
  IC799_RS01565 (IC799_01565) pilO 334906..335646 (+) 741 WP_191012245.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC799_RS01570 (IC799_01570) pilP 335657..336184 (+) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  IC799_RS01575 (IC799_01575) pilQ 336246..338372 (+) 2127 WP_191012244.1 type IV pilus secretin PilQ family protein Machinery gene
  IC799_RS01580 (IC799_01580) aroK 338384..338953 (+) 570 WP_004705195.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24113.45 Da        Isoelectric Point: 5.1326

>NTDB_id=483065 IC799_RS01560 WP_077163636.1 334265..334909(+) (pilN) [Acinetobacter seifertii strain AS79]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLITSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQDLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEDKKDKAASSLLPRVEDNYGSFVVTVDLGEMGVTTADNNADKPAVAKDTGAAK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=483065 IC799_RS01560 WP_077163636.1 334265..334909(+) (pilN) [Acinetobacter seifertii strain AS79]
ATGGCAACAATTAATTTACTACCTTGGCGTGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGCTTTGG
GGTGGTTGTGTTAGGAATTACAACCGTATTTGGGGGGTGGTTCTATTTTGATCATAAATTAGATGATCAAGAACAAGCAA
ATCAACTTATTACAAGTACTAATCAAAACCTTGATCAGCAATTAAAAGCATTAAATGGTTTACAAGAACAACGTGATGCC
ATCATTGAGCGTATGAAATTGATTCAAGATTTACAGAGTCAGCGTCCAGTCGTGGTAAGACTGGTTGATGAGTTAGTAAG
AGTCACGCCGCCTGCAATGTATTTAACGAAATTTAGCCGAACTGGGGATAAATTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACGGTAGCTGAACTACTGCGTAATCTTGAAGCATCTCCTTGGTATCGAAATGCTTTTATGAACTCTTTCTTGGCT
ACTGAAGATAAAAAAGATAAGGCAGCAAGTTCTCTTCTTCCTAGGGTAGAAGATAATTACGGTAGTTTTGTTGTGACTGT
CGATTTAGGGGAAATGGGCGTGACCACAGCTGATAATAATGCTGATAAACCAGCCGTAGCTAAAGATACGGGGGCAGCAA
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2M8MMB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

92.056

100

0.921
  comN Acinetobacter baylyi ADP1

70.616

98.598

0.696