Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IC799_RS01040 Genome accession   NZ_CP061550
Coordinates   228305..228892 (+) Length   195 a.a.
NCBI ID   WP_004705007.1    Uniprot ID   N8SBP5
Organism   Acinetobacter seifertii strain AS79     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 223305..233892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC799_RS01015 (IC799_01015) - 223378..224184 (-) 807 WP_004884868.1 SDR family NAD(P)-dependent oxidoreductase -
  IC799_RS01020 (IC799_01020) - 224288..224659 (-) 372 WP_004704999.1 MerR family transcriptional regulator -
  IC799_RS01025 (IC799_01025) tenA 224724..225398 (-) 675 WP_039255497.1 thiaminase II -
  IC799_RS01030 (IC799_01030) - 225661..226743 (+) 1083 WP_004705003.1 DUF475 domain-containing protein -
  IC799_RS01035 (IC799_01035) - 226890..228254 (+) 1365 WP_191012288.1 MFS transporter -
  IC799_RS01040 (IC799_01040) ssb 228305..228892 (+) 588 WP_004705007.1 single-stranded DNA-binding protein Machinery gene
  IC799_RS01045 (IC799_01045) - 229048..230274 (+) 1227 WP_191028788.1 tyrosine-type recombinase/integrase -
  IC799_RS01050 (IC799_01050) - 230267..231823 (+) 1557 WP_191028789.1 site-specific integrase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21137.90 Da        Isoelectric Point: 6.4822

>NTDB_id=483063 IC799_RS01040 WP_004705007.1 228305..228892(+) (ssb) [Acinetobacter seifertii strain AS79]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNNQGGGYGQNNGGGYGGQG
GFGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=483063 IC799_RS01040 WP_004705007.1 228305..228892(+) (ssb) [Acinetobacter seifertii strain AS79]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCGATCGCGACAAGTGAATCTTGGACTGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTACATTGAAGGT
TCATTACGTACACGTCAATGGACAGATCAAAATGGCCAAGAGCGTTATACGACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGCGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGTCAAAACAATGGCGGTGGTTATGGTGGCCAAGGT
GGTTTCGGTAATGGTGGCAATAGCCCGCAAGGTGGTGGTTTTGCTCCTAAAGCGCCGCAACAACCAGCGTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8SBP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.691

100

0.549
  ssb Vibrio cholerae strain A1552

44.335

100

0.462
  ssb Neisseria meningitidis MC58

37.879

100

0.385
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385