Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IC800_RS01550 Genome accession   NZ_CP061543
Coordinates   333815..334342 (+) Length   175 a.a.
NCBI ID   WP_004705193.1    Uniprot ID   N8SH39
Organism   Acinetobacter seifertii strain AS80     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 328815..339342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC800_RS01535 (IC800_01535) pilM 331365..332423 (+) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene
  IC800_RS01540 (IC800_01540) pilN 332423..333067 (+) 645 WP_019457875.1 PilN domain-containing protein Machinery gene
  IC800_RS01545 (IC800_01545) pilO 333064..333804 (+) 741 WP_191107331.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC800_RS01550 (IC800_01550) pilP 333815..334342 (+) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  IC800_RS01555 (IC800_01555) pilQ 334404..336530 (+) 2127 WP_191107332.1 type IV pilus secretin PilQ family protein Machinery gene
  IC800_RS01560 (IC800_01560) aroK 336542..337111 (+) 570 WP_004705195.1 shikimate kinase AroK -
  IC800_RS01565 (IC800_01565) aroB 337140..338222 (+) 1083 WP_191107333.1 3-dehydroquinate synthase -
  IC800_RS01570 (IC800_01570) - 338238..339111 (+) 874 Protein_301 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19340.53 Da        Isoelectric Point: 9.4007

>NTDB_id=483029 IC800_RS01550 WP_004705193.1 333815..334342(+) (pilP) [Acinetobacter seifertii strain AS80]
MKIKQITLYILACAALVGCDSRIDAVNQQMANIRNQPPLAIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRTPQPLESYALEALSMKGSMRNSRGQILALIQTPDHQVERVQVGNYMGMNQGRITQISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=483029 IC800_RS01550 WP_004705193.1 333815..334342(+) (pilP) [Acinetobacter seifertii strain AS80]
ATGAAAATTAAGCAAATTACTCTTTATATTTTGGCTTGTGCTGCGCTTGTAGGATGTGATTCAAGAATTGATGCAGTCAA
TCAGCAAATGGCAAATATCCGTAATCAACCGCCGCTAGCTATTGAACCAGCACCTATTTTTACTCCTGTACCACAATTTA
ATTATGCTGCTCATCAATTAAAAAGTCCATTTATGCCAAGTTCACTGGCTGCTGAACTCAAAATTATGGCTGGAAAACGG
GTTTATCCAAATTTCTCACGTACGCCACAGCCATTAGAAAGTTATGCACTTGAGGCTTTAAGTATGAAAGGAAGCATGCG
CAATAGTCGTGGTCAAATATTAGCTCTCATCCAGACGCCAGATCATCAAGTTGAACGCGTACAAGTGGGCAATTATATGG
GGATGAATCAGGGCCGTATTACCCAGATTAGTCCGACTCAGATTGATTTGGTTGAGATTGTGCCAGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8SH39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

94.286

100

0.943
  comL Acinetobacter baylyi ADP1

70.69

99.429

0.703